Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01043 ATGCAGCGCCACCTTTTCTCCGCCGTGTTTACTCTAAGCCTGTGCTTTAACATTGCGCTAGGACAGACTCCTACTCACAGTGTCCTGGACCAACATTGGTACCCCGGAACCGCCACGTGGTACGGCGAACCCGAGGGAGACGGTAGCACCGGAGGGGCATGTGGGTATGGTACATTGGTGGACGTGAAGCCGTTGAAGGCAAGGGTGGGTGCAGTGGGGTCAGTGTTGTTCAAGAAAGGAGAAGGCTGCGGGGCTTGTTATAAGGTGAAGTGTTTGGACCATAGCATATGTTCCAAGCGGGCAGTCACGGTTATAGTAACAGATGAGTGCCCGGGCTGCCCGTCTGACCGAACGCACTTCGACCTCAGTGGCTCCGCCTTCGGCCGCATGGCGTTTGCCGGTGAAAACGGTCAGCTCCGCAACCGTGGGGAAATCCCAGTCATTTACCGAAGAACACCATGCAAGTATGCTGGGAAAAACATTGCCTTCCATGTCAATGAAGGTTCCACACCTTTCTGGCTATCACTTCTTGTGGAGTTTGAAGATGGAGATGGTGACATCGGCTCCATGTATATACAAGAGGGAGGGTCAAGTGAGTGGGTGGAGATGAGTCATGTTTGGGGTGCAAATTGGTGCATTGTAAGAGGGCCTTTGAGAGGACCTTTTTCTGTTAAAGTAAGCACATCCACAGGGAAAAGCCTCACTGCCAAAGATGTTATTCCAAGCAATTGGACTCCTAAAGCAACTTATACATCACGTTTGAATTTCCTTTCTTAA 777 0.5122 MQRHLFSAVFTLSLCFNIALGQTPTHSVLDQHWYPGTATWYGEPEGDGSTGGACGYGTLVDVKPLKARVGAVGSVLFKKGEGCGACYKVKCLDHSICSKRAVTVIVTDECPGCPSDRTHFDLSGSAFGRMAFAGENGQLRNRGEIPVIYRRTPCKYAGKNIAFHVNEGSTPFWLSLLVEFEDGDGDIGSMYIQEGGSSEWVEMSHVWGANWCIVRGPLRGPFSVKVSTSTGKSLTAKDVIPSNWTPKATYTSRLNFLS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01043 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Vimu4g01043 258 CDD DPBB_EXPB_N 33 154 - -
Vimu4g01043 258 SMART dpbb_1 69 149 IPR007112 -
Vimu4g01043 258 PRINTS Major pollen allergen Lol pI signature 109 124 IPR005795 GO:0005576|GO:0019953
Vimu4g01043 258 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Vimu4g01043 258 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Vimu4g01043 258 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Vimu4g01043 258 PRINTS Major pollen allergen Lol pI signature 71 82 IPR005795 GO:0005576|GO:0019953
Vimu4g01043 258 PRINTS Major pollen allergen Lol pI signature 131 146 IPR005795 GO:0005576|GO:0019953
Vimu4g01043 258 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Vimu4g01043 258 Gene3D - 20 154 IPR036908 -
Vimu4g01043 258 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vimu4g01043 258 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Vimu4g01043 258 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Vimu4g01043 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Vimu4g01043 258 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Vimu4g01043 258 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Vimu4g01043 258 FunFam Beta-expansin 3 156 257 - -
Vimu4g01043 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 159 IPR007112 -
Vimu4g01043 258 Pfam Expansin C-terminal domain 161 241 IPR007117 -
Vimu4g01043 258 FunFam Expansin B3 20 155 - -
Vimu4g01043 258 SUPERFAMILY Barwin-like endoglucanases 27 158 IPR036908 -
Vimu4g01043 258 PANTHER EXPANSIN-B3 14 256 - -
Vimu4g01043 258 Pfam Lytic transglycolase 74 148 IPR009009 -
Vimu4g01043 258 Gene3D - 155 253 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01043 Vimu-Chr4 8792374 8794749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01043 4 194 Expansin Gene Family AT4G28250 67.857 6.33e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01043 K20628 - gmx:100780112 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01043 4 8792374 8794749 Vimu4g01043 4 8792374 8794749 ECH