Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01039 ATGAACATTCCTGCTACTCCTTCTAGAGTTGCTGGTTATCGTGCTCCAGAGGTGATTGAAACCCGAAAACACTCTCATAAATCAGATGTGTACAGCTTCGGTGTCCTCCTTCTTGAGATGCTCACTGGGAAGGCTCCCCTGCAATCTCCTGGACGTGATGACATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAAGAATGGACTGTAGAAGTTTTTGATGTTGAGCTTATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAGATGTTACAAATAGCCATGGCCTGTGTGGCCAAGGTGCCAGATATGAGGCCTAACATGGATGAAGTAGTAAGAATGATCGAAGAGATTCGGCAACCATCTTCTGAAGAAAATAAATCCAACGACTCAAATAATGCAAATGCTCCTTCTGCTAATTCTAGATCTGATGGTCGGGGGCCTTCTGTTGAGAACCTTGTTGGGGAGAACTTAAATTTTCAAGGCTCAAAAGCAAGCTTTTGGGATTATGACTTTTCCCACTCGGCTCATGGTCGTGCCCATAACCTTTATGATGGTGATGCTAAAATATCGATTGCTTGCGATGCAAAGCAACTGATTGCATCTCACCAAGAGATCAATCGCCTACTATCCGAAGTAGCTGAAGTGGCTCGTCTTCAGCAACAACTTAAGGAAAGGGACAACGAGAATCTTCACCTTAAGGCGAAAAAGAACTTGAAGATCTTCGCTCTTTCTGCTGCAGGGTCCCATCAAATCAGTTGTTGA 771 0.4436 MNIPATPSRVAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTVEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPNMDEVVRMIEEIRQPSSEENKSNDSNNANAPSANSRSDGRGPSVENLVGENLNFQGSKASFWDYDFSHSAHGRAHNLYDGDAKISIACDAKQLIASHQEINRLLSEVAEVARLQQQLKERDNENLHLKAKKNLKIFALSAAGSHQISC 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01039 256 Coils Coil 208 238 - -
Vimu4g01039 256 MobiDBLite consensus disorder prediction 127 149 - -
Vimu4g01039 256 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01039 256 MobiDBLite consensus disorder prediction 121 155 - -
Vimu4g01039 256 PANTHER OS05G0588300 PROTEIN 7 129 - -
Vimu4g01039 256 Gene3D Transferase(Phosphotransferase) domain 1 4 145 - -
Vimu4g01039 256 SUPERFAMILY Protein kinase-like (PK-like) 12 126 IPR011009 -
Vimu4g01039 256 Pfam Protein kinase domain 12 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01039 Vimu-Chr4 8751255 8752940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01039 1 142 Receptor kinase-like Gene Family AT5G58300 73.944 9.79e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu4g01039 Pkinase 1.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01039 - - pvy:116105820 239.965