Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01038 ATGGGCTCAAGACGACGAGGCCCATTAACCGGTTTATCAGAAAGCTTTTCATTCCGGTTGGTTGCGCGTCTCCGTTCGTCGTTCGCTGCGCATCTCCGATCTGTTATTGCTGAAGGTAACCCCTTTCGCTGTTTCACTTTCTTCGATTTGATATCTCTGAAAATGTCGATCGCAGAAACTGCTTGTTCATACGCATCACTCATCCTTCATGATGAAGGAATAGCTGTCACTGCGGACAGTATTGCCACCTTGTTGAAAACTGCGAAGGTTCAAGTAGATTCTTTTTGGCCTACCTTGTTTGCTAAACTTGCTGAGAAGAAAAATCTTGGCGATTTGATAGCAAATGCCGCAGGCGGTGGGGCACCAGTTGCTGTTGCAGCTGCCCCAGTTGCTGCTGCTGGTGGAGGTGCTGCCGCAGCCGCCCCTGCTGCTGAGGAGAAAAAGAAGGAAGAACCTGAAGAAGAGAGTGATGATGACATGGGATTCGGCTTGTTCGATTAG 501 0.491 MGSRRRGPLTGLSESFSFRLVARLRSSFAAHLRSVIAEGNPFRCFTFFDLISLKMSIAETACSYASLILHDEGIAVTADSIATLLKTAKVQVDSFWPTLFAKLAEKKNLGDLIANAAGGGAPVAVAAAPVAAAGGGAAAAAPAAEEKKKEEPEEESDDDMGFGLFD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01038 166 MobiDBLite consensus disorder prediction 140 166 - -
Vimu4g01038 166 Gene3D - 55 116 IPR038716 -
Vimu4g01038 166 Hamap 50S ribosomal protein L12 [rpl12]. 60 166 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vimu4g01038 166 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 55 166 - -
Vimu4g01038 166 Pfam 60s Acidic ribosomal protein 76 165 - -
Vimu4g01038 166 MobiDBLite consensus disorder prediction 151 166 - -
Vimu4g01038 166 CDD Ribosomal_P1 59 115 - -
Vimu4g01038 166 FunFam 60S acidic ribosomal protein P1 55 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01038 Vimu-Chr4 8748955 8750041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01038 55 166 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 54.386 1.61e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01038 K02942 - gmx:100791962 133.265