Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01030 ATGGCAGCAGCGAACGGTGGGAAATTCGATGTGGGAGATCAAACTCACAATTGTGAGATTGAAAAGGGAAACGGCGTGGGTTCAAGCTCTCAGAGGCGTCAATGGAAGCCAGTTTTTGATGATACTTCCATTTCACACGATAGACCTCTGAAGAAAATCCGCAGCCCCGATCGCCGTAACACAAACCAATCTTCCTCCTCCTCTTCTTCTTCTTCTGTTACTTTTCAACCTTCTCCTCTCTCTACCCCTGCTTCATCCTCTTCAAGAATCGTGTTCCCTTTCGCCTTCAACGGTTCCCAATACCCAATGCAATTCCCGCACCAATTTGGAGCCACAAATTCACCCTTCCCTCACCCCTCTTTCCAAAACCCCCAACAGATGATATCATTCGGCTCCCAACAACAAAACCTTCCCTTTCCACCAAACATGGCCCGAGATTCTTCTCTTCCACACCACCACCATCATCAACAGCATCCGCAGCAACTTCTTCAGCATTGGAGAGACGCTCTGAATCTAAGTCCCAGAGGAATTTTCACCCACTTGGGGCCAGATGGAAGGCCATTGTTTAGGCCTCCAACGCAGCCCATAAACACCACCAAGCTCTACAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTCGCTGAAATTCGTCTTCCTCGAAACAGAACGCGTCTGTGGTTGGGCACATTTGACACGGCGGAGGACGCCGCCATGGCCTACGACCGCGAAGCCTTCAAACTCCGAGGAGAAAATGCCAGACTCAATTTCCCCGAAATGTTCCTCAACAAGGAGAAAAACGAACAAGTTGAAGAAGAACCTTCTTCACCTGTTCAAGACCAGCATGAACAAAAACCCGTTCCTGAAGGCCGTGACATGCCAAGAGAAGAGTCTAACGAGAATGACTCGGGAATTGGATCGAGCGACCCTACTGTGAGTGATGAGGTTCATGCTGCTGCTGCTTCTGCAGAAGGAGGTGACGGGGTTTCTCAGGAACTTGTTTGGGGAGAAATGTCTGCATGGTTCAATGCTATTCCTGCAGCTTGGGGACCTGGTAGCCCTGTGTGGGATGATTTGGATCCCACCAATAATCTTCTTTACCAATCACACGTTCCTTTTTCAAATTCCAATCAGCAAGAGATGAATGATGCCTCTGATGATGCTCAGAGACATGAACACAACACGGGATCAGGTTACTTATGGAAGGATCAGGATTGA 1218 0.4901 MAAANGGKFDVGDQTHNCEIEKGNGVGSSSQRRQWKPVFDDTSISHDRPLKKIRSPDRRNTNQSSSSSSSSSVTFQPSPLSTPASSSSRIVFPFAFNGSQYPMQFPHQFGATNSPFPHPSFQNPQQMISFGSQQQNLPFPPNMARDSSLPHHHHHQQHPQQLLQHWRDALNLSPRGIFTHLGPDGRPLFRPPTQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPEMFLNKEKNEQVEEEPSSPVQDQHEQKPVPEGRDMPREESNENDSGIGSSDPTVSDEVHAAAASAEGGDGVSQELVWGEMSAWFNAIPAAWGPGSPVWDDLDPTNNLLYQSHVPFSNSNQQEMNDASDDAQRHEHNTGSGYLWKDQD 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01030 405 MobiDBLite consensus disorder prediction 1 86 - -
Vimu4g01030 405 SUPERFAMILY DNA-binding domain 201 259 IPR016177 GO:0003677
Vimu4g01030 405 MobiDBLite consensus disorder prediction 384 398 - -
Vimu4g01030 405 MobiDBLite consensus disorder prediction 59 86 - -
Vimu4g01030 405 PRINTS Ethylene responsive element binding protein signature 202 213 IPR001471 GO:0003700|GO:0006355
Vimu4g01030 405 PRINTS Ethylene responsive element binding protein signature 224 240 IPR001471 GO:0003700|GO:0006355
Vimu4g01030 405 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 22 359 - -
Vimu4g01030 405 FunFam Ethylene-responsive transcription factor 2 200 259 - -
Vimu4g01030 405 ProSiteProfiles AP2/ERF domain profile. 201 258 IPR001471 GO:0003700|GO:0006355
Vimu4g01030 405 Gene3D AP2/ERF domain 201 260 IPR036955 GO:0003700|GO:0006355
Vimu4g01030 405 Pfam AP2 domain 202 250 IPR001471 GO:0003700|GO:0006355
Vimu4g01030 405 MobiDBLite consensus disorder prediction 39 58 - -
Vimu4g01030 405 MobiDBLite consensus disorder prediction 266 328 - -
Vimu4g01030 405 MobiDBLite consensus disorder prediction 266 299 - -
Vimu4g01030 405 SMART rav1_2 201 264 IPR001471 GO:0003700|GO:0006355
Vimu4g01030 405 MobiDBLite consensus disorder prediction 21 38 - -
Vimu4g01030 405 MobiDBLite consensus disorder prediction 371 405 - -
Vimu4g01030 405 CDD AP2 200 259 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01030 Vimu-Chr4 8713441 8715828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01030 41 375 AP2-EREBP Transcription Factor Family AT2G20880 45.000 5.69e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu4g01030 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01030 - - var:108333403 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01030 4 8713441 8715828 Vimu4g01030 4 8713441 8715828 ECH