Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01020 ATGGGTTGCTGTGTCTCAACAAGTAGTAAGAGTGCTCGTAGCAGCAGGAGCAATGGAGACACAAACGTTCAGACGTGTCTAGAAATAGGATTCTGTGGTCAAAAGAGTGCAAGGAGAACATTCTCTGACCATGTTATCTCTCTGCACCAGTTACCATCTTTACCGAACAGAATTTTCACCAATGGAAAGAGCAGGTCTTCTTGCATATTTACACAGCAGGGTCGTAAGGGGATTAATCAGGACGCCATGATTGTATGGGAAGATTTCATTTCAGAAGATGTGACCTTTTGTGGTGTCTTTGATGGCCACGGTCCACACGGTCACCTTGTTGCACGCAAAGTCCGGGAAGCCTTGCCACTCAAACTGCTTTCATTTTTGCATTCCTCGGAATCAGGGCAAAATGGTTCAGGTAAAACTTGTTTCAGAGGCAGCATGAAGCCTGAAAGTGGAGAGTCTGAGAAAGATGTTGCTGCTGAAGATAAACTGAATTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGATAAAGAGCTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTCACTGTAGTGAAACAGGGTTCAAATTTGTTCATGGGCAATATTGGGGATTCCCGAGCAATCATGGGATCCAAGGACATCAATGATGTCATGGTGGCAATTCAGTTGACCGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCAGAAAGAATCAAACGATGCAAGGGTAGGGTATTTGCATTACAAGATGAGCCAGAAGTTCACAGGGTATGGTTGCCTTTTGATGATGCACCAGGATTAGCAATGGCTCGAGCATTTGGAGATTTTTGCTTGAAAGAATACGGAGTGATTTCTATACCTGAATTTTCTCATCGGTTACTAACAGACAAAGATCAGTTCATTGTTCTTGCTTCAGATGGGATATGGGATGTTTTGAGCAACGAAGAGGTAGTTAAGATTGTATCTTTAGCACCAAGTCGATCATCAGCAGCAAGAATTCTGGTGGATTCCGCGGCTCGAGAGTGGAAACTTAAGTATCCTACTTCAAAAGTGGATGACTGTGCTGTTGTGTGCCTGTTTCTGGATGGAAAAATGGATTCAGAATCTGACTGTGATGAGCAATTCTTCTCTTCTGCTATCATGCAGAGCAACCATTCAGGCAATCTGGTTGAGACAGATGATGGACAAAAGTCAGAGCCAACTTTGCAAAGGAACTTTACTGTGAGATCCTCAGAAGAAAATGGCAGGTATGGAGGAAGAGGAGTATCTGTTGATGTTGTTGAAGATGGAAGATCAGGGCCTGAAGATGAAAATTGGTTAGGTTTGGAGGGTGTGAGCCGAGTAAACTCACTGGTTCAACTTCCTAGATTTTCTGAGGAAAAGCCAAACTCTTGA 1422 0.4367 MGCCVSTSSKSARSSRSNGDTNVQTCLEIGFCGQKSARRTFSDHVISLHQLPSLPNRIFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFISEDVTFCGVFDGHGPHGHLVARKVREALPLKLLSFLHSSESGQNGSGKTCFRGSMKPESGESEKDVAAEDKLNSMWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTVVKQGSNLFMGNIGDSRAIMGSKDINDVMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVHRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDQFIVLASDGIWDVLSNEEVVKIVSLAPSRSSAARILVDSAAREWKLKYPTSKVDDCAVVCLFLDGKMDSESDCDEQFFSSAIMQSNHSGNLVETDDGQKSEPTLQRNFTVRSSEENGRYGGRGVSVDVVEDGRSGPEDENWLGLEGVSRVNSLVQLPRFSEEKPNS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01020 473 Pfam Protein phosphatase 2C 92 345 IPR001932 -
Vimu4g01020 473 CDD PP2Cc 65 370 IPR001932 -
Vimu4g01020 473 MobiDBLite consensus disorder prediction 1 20 - -
Vimu4g01020 473 SMART PP2C_4 55 368 IPR001932 -
Vimu4g01020 473 SUPERFAMILY PP2C-like 59 372 IPR036457 -
Vimu4g01020 473 MobiDBLite consensus disorder prediction 136 157 - -
Vimu4g01020 473 FunFam probable protein phosphatase 2C 52 57 373 - -
Vimu4g01020 473 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Vimu4g01020 473 MobiDBLite consensus disorder prediction 418 448 - -
Vimu4g01020 473 Gene3D - 57 378 IPR036457 -
Vimu4g01020 473 PANTHER PROTEIN PHOSPHATASE 44 368 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01020 Vimu-Chr4 8599081 8601453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01020 1 473 PP2C-type Phosphatase Gene Family AT1G03590 68.553 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01020 - - gmx:100777448 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01020 4 8599081 8601453 Vimu4g01020 4 8599081 8601453 ECH
Vimu4g01020 4 8599081 8601453 Vimu5g01482 5 25900491 25903445 PCT