Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01010 ATGAAGTCCGACAGAGACGGCGACTCCTCCGCCAGCCGATCCCGGAGCCCTGCCAGAGTATTCGAGAATTGCGACGGCGCCGCCGGAGAGGCTGCAGATGATGAACTGAAGAGTCTCGCGGCACATTTGATGTTTCCGGCAACACTTCTAATCCGTGAATGCATCATCATCTCTCTCCGTCGGGACAATCACAGATCGCGTCACGCAGATAGAGCGGAACATGAGGACGAAGATTCACGCAAACTCACACCAACCACCCTCTGTATGGGCCTCAATAAGAGAAGCATTACTTCCCAGGCTTCTTCAGTTTCTCTCTTACGTAGATTTTTTGGGGGATTAAATTTCCAGAAGAGGATGGTAAGACGATTGCTTTCAAGGGCAAGTAGTGAGCAGAAGATTAACATTGAGCTTGGAAGAAGGGGTGAGGAGAGATCTGGCTCACAGTACAAGAGAGTGAAGATCCATGGCGAAGTTCTTTTGGGATTTCTGTTCTTCTGCATAGTCCAGTTTTCACATGCAGACACTGATCCCTCTGATGTTGCAGCAATAAATAACTTATATACTGCGTTGGGCAACCCTGTTCTTCCTGGGTGGGTTCCTAGTGGAGGTGACCCGTGCGGACAAGGGTGGCAAGGTGTTCGATGTAATGGTTCAGTAATTCAAGAAATAACTCTGAATGGTGCAAACTTGGGAGGAGAACTGGGTGACAGCTTAGGAAGTTTTGTTTCTATCAGAGCAATAGTTCTAAACAACAATCACATTGGGGGAAGTATTCCATCCAGTTTGCCAGTCACTTTGCAACACTTCTTTCTATCAGATAACCAGTTCACTGGAAGTATTCCAGCCTCTTTATCCATGTTGGCTGAATTGACTGACATGTCTCTTAACAACAATCTTTTAACAGGAGAAATACCAGATGCATTTCAGTCTCTTACTCAATTGATCAATCTAGATTTATCTAATAATAATTTAAGTGGGGAATTGCCTCCATCTGTGGAGAATTTGTCAGCTCTGACCAGCGTACATTTACAGAACAATAACCTCTCTGGCACCCTGGATGTTTTTCAAGACCTTCCGCTTCGAGATTTGAATGTTGAGAACAATCAGTTTGTTGGACCCATACCCCCGAAGCTGTTAAGCATTCCTAACTTCAGAAATGATGGAAACCTGTTTAATCTTAATGTCAATGCTACTATAACCCCGGCACGTCCACCTCATTCTCCAGTGCCAGTATCGCCATCAGGAACTGTGGTTTCTGGGACTCCATCATCTGGACGTTTACCTACTAAACCTACTGATGGACCAACTGCAGCAAAGGAATCAAATTCTGTGAAATCGAAAAAGAACACCAAGAGGGTGGTTTGGATATCTATTTCTAGTATATTGATGTTTGTTATTGTAGTACTGGGACTTCTTCTCTTTGTTCCAAGATGTAGTAGAAGAGAACAGGTTAACAAAAGTTCCAAGCAACATCAAGTGGGCAAATATGGAGGTGAAAGACAGAATCCTAGAGAATATGAGGGATTTGGTGCTGTTGTGAGGCCAAAAGGGGATCAAGAGGAGGCAAGGAGAATGAGGGCAATTCCAAAGCTACAAGGCGAGCAAGAGAAGAATGAACAAAGAATGGGAACAATCCCAAAGCTGTTAGATCATGAGATAGATATAAGTTCATTAGATGCATATTCCATGCCGTCTCCACCAGTGCCTCCTCCACCTCCACCACTCCCTACTGAGAGTGCGATTGTTGAACCAACCTCATTCCACAAAGGGGCTAACTTCAATCCTCCCAAAAAAAGTCCAGTTCCTCCCACTTTTGCGAAAACTTTCACCATTGCATCCCTACAACAATATACAAATAGCTTTTCTCAAGACAATCTTATAGGTTTAGGAATGCTGGGGACTGTGTATAAGGCAGAACTTCCTGATGGAAAGATACTTGCTGTGAAGAAACTAGACAAGAGAGTTTCTAATGACCAAACAGATGATGAGTTTCGTGATTTGATAAACAACATTGACAGAATCCGGCATGCAAATATTGTTGAGCTTATTGGATACTGTTCCGAGCATGGTCAAAGGCTTCTTATTTATGAGTACTGTAGTAATGGTTCATTGCAGGATGCACTCCATTCAGATGATGAATTCAAAACAAGACTGTCATGGAATGCTCGTATCCGGATAGCACTTGGTGCAGCTAGAGCCTTAGAGTACTTGCATGAGCAATGTCAGCCACCTGTTGTACACAGAAATTTCAAGTCTGCTAACATTCTCCTTGATGATGATGTTTCTGTTCGCCTATCTGATTGTGGTTTGGCTCCATTAATAACTAAAGGTTTTGTAAGTCAGCTCTCAGGACAACTTCTAGCAGCTTATGGCTATGGAGCACCAGAGTTTGAGTCAGGAATTTACACATACCAGAGTGATGTTTACAGCTTTGGAGTGGTTATGTTAGAACTTTTGACAGGCCGTCAGTCCTACGACAAAACACGAGGTCGAGGGGAGCAGTTTCTGGTGAGGTGGGCTATTCCACAACTGCATGACATTGATGCATTATCAAAGATGGTTGATCCTTCTCTAAAAGGAGATTACCCAGCCAAATCATTGTCAAATTTTGCAGACATTATTTCTAGATGTGTTCAGTCGGAGCCAGAATTTAGGCCAGCAATGTCAGAAGTTGTCTTGTACTTGATAAATATGATCAGGAAGGAATCTCAGCAAAGTGAATCAAATGAATAA 2733 0.4325 MKSDRDGDSSASRSRSPARVFENCDGAAGEAADDELKSLAAHLMFPATLLIRECIIISLRRDNHRSRHADRAEHEDEDSRKLTPTTLCMGLNKRSITSQASSVSLLRRFFGGLNFQKRMVRRLLSRASSEQKINIELGRRGEERSGSQYKRVKIHGEVLLGFLFFCIVQFSHADTDPSDVAAINNLYTALGNPVLPGWVPSGGDPCGQGWQGVRCNGSVIQEITLNGANLGGELGDSLGSFVSIRAIVLNNNHIGGSIPSSLPVTLQHFFLSDNQFTGSIPASLSMLAELTDMSLNNNLLTGEIPDAFQSLTQLINLDLSNNNLSGELPPSVENLSALTSVHLQNNNLSGTLDVFQDLPLRDLNVENNQFVGPIPPKLLSIPNFRNDGNLFNLNVNATITPARPPHSPVPVSPSGTVVSGTPSSGRLPTKPTDGPTAAKESNSVKSKKNTKRVVWISISSILMFVIVVLGLLLFVPRCSRREQVNKSSKQHQVGKYGGERQNPREYEGFGAVVRPKGDQEEARRMRAIPKLQGEQEKNEQRMGTIPKLLDHEIDISSLDAYSMPSPPVPPPPPPLPTESAIVEPTSFHKGANFNPPKKSPVPPTFAKTFTIASLQQYTNSFSQDNLIGLGMLGTVYKAELPDGKILAVKKLDKRVSNDQTDDEFRDLINNIDRIRHANIVELIGYCSEHGQRLLIYEYCSNGSLQDALHSDDEFKTRLSWNARIRIALGAARALEYLHEQCQPPVVHRNFKSANILLDDDVSVRLSDCGLAPLITKGFVSQLSGQLLAAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDKTRGRGEQFLVRWAIPQLHDIDALSKMVDPSLKGDYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLINMIRKESQQSESNE 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01010 910 Pfam Leucine rich repeat N-terminal domain 177 216 IPR013210 -
Vimu4g01010 910 Gene3D Phosphorylase Kinase; domain 1 594 698 - -
Vimu4g01010 910 Gene3D Ribonuclease Inhibitor 176 403 IPR032675 -
Vimu4g01010 910 MobiDBLite consensus disorder prediction 482 503 - -
Vimu4g01010 910 MobiDBLite consensus disorder prediction 412 445 - -
Vimu4g01010 910 SUPERFAMILY Protein kinase-like (PK-like) 595 895 IPR011009 -
Vimu4g01010 910 ProSiteProfiles Protein kinase domain profile. 621 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01010 910 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 699 909 - -
Vimu4g01010 910 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 588 698 - -
Vimu4g01010 910 MobiDBLite consensus disorder prediction 401 445 - -
Vimu4g01010 910 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 176 402 - -
Vimu4g01010 910 SUPERFAMILY L domain-like 175 383 - -
Vimu4g01010 910 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 215 892 - -
Vimu4g01010 910 Gene3D Transferase(Phosphotransferase) domain 1 699 910 - -
Vimu4g01010 910 Pfam Protein tyrosine and serine/threonine kinase 624 893 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01010 Vimu-Chr4 8513015 8527982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01010 167 906 Strubbelig Receptor Gene Family AT4G03390 60.474 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu4g01010 PK_Tyr_Ser-Thr 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01010 - - gmx:100811490 1280.39