Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01008 ATGGAGGTGGTACTTCCATTTGAAGTGGAAATCACATCCTTACGAGTATTGATGGAAACCCAATTAGAAGAAGCCGAATGGGTTCAAGCCCGATTCGACCAGCTTAATCTTATCGAGGAAAAAAGGTTAACAGTTGTGTGCCACGGACAGCTATACCAAAGAAGAATGAAAAAGGCATTTGATAAAAGGGTGCACCCAAGGGAGTTTCATGAAGGCGAGCTAGTGTTGAAGAAGATTTTGCCTATACAAAGAGATCATAGAGGAAAGTGGACCCCAAACTATGAAGGGCCTTTTGTAGTAAAGAAAACATTTTCTGGTGGGGCACTAATTCTCACAAGAATGGATGGAGAGGAGTTACCGTTGCCGGTTAATTCCGATGCTAGTAAAATTGGGTTGGCTGAGATGCTGAAATTGGACTCTGCTGCCACTGCACTGAGACATTCATTTGGAGAAAAATTTGTGCACTGTTGCTGCCACACTTGGCTTCTGCTGGGCGGTAGTGTGAAATTGGCTGGCACAGGCTTAAGTGGAACGACGTCGTCTTGGAGCATCTTGGCAGCAGTTGCGGGGCAAAGAGTGAAATCACCTGAGAGAAAGAAAGCTCCAGTTCTTGTGCCATTGATCAGAAGCTCAAGGAAGATGAAGCTCGAGGAACGTGTGGAAGGGTCGTTGGATGAAGAAGATATAATGAAGACTCCGCGAATTAGACTTTCTGATTGCGAGAGTTCGAGAACGTGGCGGGTTTTTGTGTTTTGGATTGTTGATCGAGACTCGCGGTGGTGGCAGCCCGCGGTGGCTTTGATCGCGCCTCTATCGGAACTTGTTCTTATAATCAGTTGGCCATCTGCCTTTCATAACCATTTTCCTACACCTTCTCGGGTTCAAGCTAATTTGGATTGCAAAAAGCGTTTTCTGTTCTCGGCCCTCTGCTTGGCAATGGTCGGATTTATTTTTCTGTTCTGTGAGTTTGGCCCTCTGCGAGGCAATGGTCAAATCCAGGTTTTAGTTTTCTGTTATCGGCCCTCTGCTTGGCAATGGCAATGGTCAAATCTAGGTTTTAGTTTTCTGTTTTCGGCCCTTTGTTTGGCAGTGGTGGGATTTATTTTTCTGTTCTGTGAGTTTGGCCCTTTGCGAGGCAATGTTTGGCCCTCTACGAGACAATGGTCAAATCCAGGTTTTAGTTTTCTGTTATCGGCCCTCTGCTTGGCAATGATCGGATTTATTTTTCTGTTCTGTGAGTTTGGCCCTCTGCGAGGCAATGGTCAAATTCAGAGAACCCATTTTCATCTCCATAAACCCCTACATCGCAACCCGGGCCTCATCGCCCAACTCATACAGATTCATCACGTCCCTACTCCATATCCCCCTATTAAAGAAAATACAGCAAGTCATGAAGCAATTTCCCACCCTCTTTCATCCCTTGTTCAACCCCAATCATCATTAAAATTGAATCCAGAGCTCCCACAGAGAACCCATCACATAGAGGTGGTGGCTGTAGAGGTGGATTTGGTCACGGCGGTAGAGGAGGACGGCGTGGTGACTGGCGATGACTCTGGTCGTGACTGGTGGCAGAGAGAGAGCTTCTCGCGCGCGAAAAGGGAAAGGGGGAAGGCCAGTGTTGTGGTGGTAGCACGAGTTAAGAGACTTCGTCTGTTGGATTTGACGAGGGAGAAAACTGATAGCGACGACGGTGATCGTAGCGACATCGTCGGCGGCGGTGTTCAAGGGAGAGAGGGGGCGTTGTCGCCGGCGGTGACTCCGGTGGAACGTGGTGTCGCTTGCGATGTCGCAAGCGGCGGCCCACCATGGCTGGCCGGTTATGGTACGAGTGGTGGCGCATCTTGTGGGAGAGACGAAGCTCAGGTCTTTGCTTTCCTCGAAGGAGACTTTGAGTCTCAGCAAGTGTGTGAGAGAACCCCTAAAGGGGTTCCTGAGCTTGGAGTGAAGAGGGTTTGGGCTTGGGTACGACCTTCGGACAAGCGTTGTAGGGTGCTAACACCTTCCCTACACGTAACCGATTCCCGAACTCAATCTTTGATTTTTGTGGACCTTCCCTACACGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTTAAAGTTATGGGTCGAACAGGGTCTAGAGGTCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAAAACAGGCACATCATGAGGAATGTGAAAGGACCTGTGAGAGAAGGAGACATTCTCACCCTACTTGAGTCCGAAAGAGAAGCAAGAAGAGATCTTCTCCAAGGAGTGAAAGTTAGGTCTGGCCGCCCTCTTCTGTCAAAGAATGATTCTGAAATCGCAATAGGGCTATTTATAGCTGAGGAGCGTCACAAAAATCAGGCCCAAGCCCAGCAGACAACCGCTCGACGTTACACTTATGTCGCCCGACGGTTTGCCCCTAATCGCGCCACCGCCCGGCGTTTGCCTCTAATCGCAAAACCGCCTGGCTGCACCGCCAGGGCGCGAGACAATGATCCCCCTCGCATTTGGCTACCCAACGTTGGATTTTGGGTGCTGGGCGGTTCCTAG 2547 0.4939 MEVVLPFEVEITSLRVLMETQLEEAEWVQARFDQLNLIEEKRLTVVCHGQLYQRRMKKAFDKRVHPREFHEGELVLKKILPIQRDHRGKWTPNYEGPFVVKKTFSGGALILTRMDGEELPLPVNSDASKIGLAEMLKLDSAATALRHSFGEKFVHCCCHTWLLLGGSVKLAGTGLSGTTSSWSILAAVAGQRVKSPERKKAPVLVPLIRSSRKMKLEERVEGSLDEEDIMKTPRIRLSDCESSRTWRVFVFWIVDRDSRWWQPAVALIAPLSELVLIISWPSAFHNHFPTPSRVQANLDCKKRFLFSALCLAMVGFIFLFCEFGPLRGNGQIQVLVFCYRPSAWQWQWSNLGFSFLFSALCLAVVGFIFLFCEFGPLRGNVWPSTRQWSNPGFSFLLSALCLAMIGFIFLFCEFGPLRGNGQIQRTHFHLHKPLHRNPGLIAQLIQIHHVPTPYPPIKENTASHEAISHPLSSLVQPQSSLKLNPELPQRTHHIEVVAVEVDLVTAVEEDGVVTGDDSGRDWWQRESFSRAKRERGKASVVVVARVKRLRLLDLTREKTDSDDGDRSDIVGGGVQGREGALSPAVTPVERGVACDVASGGPPWLAGYGTSGGASCGRDEAQVFAFLEGDFESQQVCERTPKGVPELGVKRVWAWVRPSDKRCRVLTPSLHVTDSRTQSLIFVDLPYTMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRDLLQGVKVRSGRPLLSKNDSEIAIGLFIAEERHKNQAQAQQTTARRYTYVARRFAPNRATARRLPLIAKPPGCTARARDNDPPRIWLPNVGFWVLGGS 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01008 848 Gene3D - 686 751 IPR012340 -
Vimu4g01008 848 PANTHER 40S RIBOSOMAL PROTEIN S28 688 750 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vimu4g01008 848 FunFam 40S ribosomal protein S28 686 752 - -
Vimu4g01008 848 Pfam Ribosomal protein S28e 691 750 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vimu4g01008 848 SUPERFAMILY Nucleic acid-binding proteins 688 750 IPR012340 -
Vimu4g01008 848 Hamap 30S ribosomal protein S28e [rps28e]. 688 752 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vimu4g01008 848 MobiDBLite consensus disorder prediction 558 580 - -
Vimu4g01008 848 CDD S1_S28E 693 750 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01008 Vimu-Chr4 8483684 8498838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01008 688 750 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.302 1.20e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01008 - - var:108324440 246.514