Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01007 ATGGCCGACATTCACGAAGCTGGTGTTGTTGCAGATCCCTCCCAGATCGATGTCAAGCTTTTCAACCGCTGGAGTTTCGATGATGTTCAGGTTAATGACATTTCTCTGGCCGATTACATTGGAGTTGTGGCATCCAAGCATGCCACTTATGTTCCTCACACTGCTGGTAGGTACTCTGTGAAGCGGTTCAGGAAGGCCCAGTGCCCAATTGTTGAGAGGCTCACCAACTCTCTCATGATGCACGGCAGAAACAATGGCAAGAAACTCATGGCTGTTAGGATCATAAAGCATGCTATGGAAATTATTCATTTGTTGACTGACCTGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGAATTGGTTCTGCTGGAGTTGTAAGGAGACAGGCTGTGGATATCTCACCCCTTCGCCGTGTTAATCAGGCTATCTATCTTTTAACAACTGGTGCACGGGAAGCTGCATTCAGAAATATCAAAACTATTGCAGAATGCTTGGCTGATGAACTTATTAATGCAGCCAAAGGGTCATCCAACAGGTAA 546 0.456 MADIHEAGVVADPSQIDVKLFNRWSFDDVQVNDISLADYIGVVASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01007 181 ProSitePatterns Ribosomal protein S7 signature. 72 98 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vimu4g01007 181 FunFam 40S ribosomal protein S5 3 181 - -
Vimu4g01007 181 NCBIfam 30S ribosomal protein S7 17 180 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vimu4g01007 181 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 3 181 IPR000235 GO:0006412
Vimu4g01007 181 Pfam Ribosomal protein S7p/S5e 60 179 IPR023798 -
Vimu4g01007 181 Gene3D Ribosomal protein S7 domain 4 181 IPR036823 -
Vimu4g01007 181 SUPERFAMILY Ribosomal protein S7 19 180 IPR036823 -
Vimu4g01007 181 CDD uS7_Eukaryote 19 180 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vimu4g01007 181 PANTHER RIBOSOMAL PROTEIN S7 16 181 IPR000235 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01007 Vimu-Chr4 8456543 8458182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01007 17 180 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 87.791 4.55e-111 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01007 K02989 - gmx:100815850 318.161