Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01005 ATGATGAAACACATGGGTGTATATGAAACAAGATCAAGCCCTGTATATTGGCCGATCGGAGGATGCAACAAATATCATCAAAGGGTTTTGTATAAGGAGACATTGCCAACAACTCTTGCTCAAATTGGTTTGTCATCAACTACATGTAAATACTGGATAAGTGGTAATTGTAGGTATGGTGACCAATGTCAAAATTTACATTCAAAGGAAATTTGTGTTAGCACACAAAAGGAAGACAATTCAAGACCTAAAAGATTAATATGGTGGACACCACCTATTGAAGGATTTGTGAAGATTAACTGTGATGGAGCCTTCAGTGTCCATGGAAATAAAGCAGGTGCAGGAGGAGTTATGAGGAATTCTGAAGGGAAATTTGTTTTTGGTTTCTCTAGTGGCTTAAAAAATTCCTCAGTTTTGATGGCTGAATTAAAGGCAATCAAGATTGGAATGAAAGCAGGCATATTGAAGGGGTACAAAAACTTAATTGTTGAGAGTGATTCTAAATTTGCCATCGAGATCATTACCACCACACTAGCTGAAGAAAAGAATTATTATGATGATACAAGTGAAAATGTCTTCTCTTCAATCATTCAGATGACTAAGACTGCTAATAAGATTTATTGGAATCATGTGTTTAGGGAAGTGAACTCAGTTGCGGATAGTCTTGCCAAACATGCATTATCATTGTGTCCTGATGATGGTGTTAAACTTTTTGAAGATCCTCCCTATTTTATTGAGAGCCATCTCTCTTTAGATAGAACTGGACAAATACATTGTAGATGA 783 0.3627 MMKHMGVYETRSSPVYWPIGGCNKYHQRVLYKETLPTTLAQIGLSSTTCKYWISGNCRYGDQCQNLHSKEICVSTQKEDNSRPKRLIWWTPPIEGFVKINCDGAFSVHGNKAGAGGVMRNSEGKFVFGFSSGLKNSSVLMAELKAIKIGMKAGILKGYKNLIVESDSKFAIEIITTTLAEEKNYYDDTSENVFSSIIQMTKTANKIYWNHVFREVNSVADSLAKHALSLCPDDGVKLFEDPPYFIESHLSLDRTGQIHCR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01005 260 SMART c3hfinal6 44 69 IPR000571 GO:0046872
Vimu4g01005 260 Pfam Zinc finger domain 49 67 - -
Vimu4g01005 260 SUPERFAMILY CCCH zinc finger 46 68 IPR036855 GO:0046872
Vimu4g01005 260 ProSiteProfiles Zinc finger C3H1-type profile. 43 70 IPR000571 GO:0046872
Vimu4g01005 260 Gene3D - 41 100 - -
Vimu4g01005 260 ProSiteProfiles RNase H type-1 domain profile. 93 228 IPR002156 GO:0003676|GO:0004523
Vimu4g01005 260 CDD RNase_H_like 99 224 IPR044730 -
Vimu4g01005 260 Gene3D - 101 230 IPR036397 GO:0003676
Vimu4g01005 260 PANTHER OS05G0353850 PROTEIN 73 256 - -
Vimu4g01005 260 SUPERFAMILY Ribonuclease H-like 96 229 IPR012337 -
Vimu4g01005 260 Pfam Reverse transcriptase-like 100 226 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01005 Vimu-Chr4 8440500 8441373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01005 89 174 Glycoside Hydrolase AT2G33160 34.091 1.03e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu4g01005 RVT_3 1.1e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01005 - - pvu:PHAVU_006G058500g 322.013