Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00980 ATGGCAATTCTTAGAGGACACAAACTGGTTGAAAAATGTAAGATTGGTCTATCAATGAGATCAACTTCTGTTCCTCTGTCGTTCCTTGATTTGCCTTTAGCAGGTCCTATTTATGTCAGGCGTCAATTCTTCTACCACTTCCCCCATTCTACACTCCATTTCTGCGAAGCTACACTTCCTTCTCTCAAAACCTCTCTCTCTCAAACCCTTCAACTCTTCTTCCCTCTCGCCGGAAACCTCCTTTGTCCTCCACCACCCCACAAACCCTTCATTCGTTGCACCGATGATGACTCTGTCCCCTTCACTATCATCGAGTCCAAAGCTGATTTCGACTACCTCTCATCAAACCACGCCAAAAGTCTCAAAGACTTGGAACACTTGGTTCCCAAGTTAGCATGCACGAACACACACGATGACACGTTTGTGTTCCCTTTGCTGGCATTGCAAGCTACGGTTTTCCCCAACCGGGGCCTTTGCATCTCGATCACCTATTGCCACGTGATGGATGATAGTTGTTGCAGCAATTTCATGAAGTCTTGGGCTTACTTTTGTCGAAGTGGTGTTGACTTGACTCTTGCAGAAAAGTCAGCACCGTGCATGGACAGGGGAGTGTTAAAGGACCCCAAAGGGTTAGAAGCTATCTTCTTAAGAGATTATTTTGAAGAGAGGTCAACTTGGAAGGAAAAGCTCGCTGGGAAAACCTCTGAGGTTTGCAATGCTGAAGATTATGTCAAAGCCACGATTGTTTTTGGAAGGGATGATATCGAGAGGCTGAGAAGAGTGGTGTTAAAGCAGTGGAAGAGAAGTGAAGAATTGAGTTCGTCACAATATGTATCAAAATTTGTGGTGAGTTGTGCTTTTGTGTGGGCTTGTTTGGTTAAAACAAGACACAGAAGTGAAGATGAAGAAGAAGATAAGGAAGAGTACTTTCGTTTCGCTGCAGATTGCAGAGATTTGCTTGAGCCTGCTGTGCCAGAAACATACTTTGGAAACTGCTTAACGTTATGTTTTGCAATGCTGAAGAGAAAGGAGATGAAGGGAGAAGGTGGTTTTGTGAATGCGGTGAAGGTTATGAGAAGAGCAGTGAGTGATATGAAAAGTGATCTGTTTAAGGATGCAGAAAACTGGAGGGAAGCATTTACGAGGATGTTTGCTTTGGGAAGTACTTTGATAGTTACAGGGTCACCCAAGTTCACTGTTTATGAGACTGATTTTGGATTTGGAAAGCCTAAGAAAGTGGAAATGGTACATTCCATTAAGGGTATGTCTTTAGCAGAGAGTGGAGAAAAGGAAGGAGGACTTGAAGTTGGCTTGATGACAAAAGAGGCAATTAGTGGAAATCCATGGGATCCAAATTCTAGAACTAGTAGAAGGTTATCTAGAGAAATTTAA 1392 0.4318 MAILRGHKLVEKCKIGLSMRSTSVPLSFLDLPLAGPIYVRRQFFYHFPHSTLHFCEATLPSLKTSLSQTLQLFFPLAGNLLCPPPPHKPFIRCTDDDSVPFTIIESKADFDYLSSNHAKSLKDLEHLVPKLACTNTHDDTFVFPLLALQATVFPNRGLCISITYCHVMDDSCCSNFMKSWAYFCRSGVDLTLAEKSAPCMDRGVLKDPKGLEAIFLRDYFEERSTWKEKLAGKTSEVCNAEDYVKATIVFGRDDIERLRRVVLKQWKRSEELSSSQYVSKFVVSCAFVWACLVKTRHRSEDEEEDKEEYFRFAADCRDLLEPAVPETYFGNCLTLCFAMLKRKEMKGEGGFVNAVKVMRRAVSDMKSDLFKDAENWREAFTRMFALGSTLIVTGSPKFTVYETDFGFGKPKKVEMVHSIKGMSLAESGEKEGGLEVGLMTKEAISGNPWDPNSRTSRRLSREI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00980 463 Gene3D - 7 230 IPR023213 -
Vimu4g00980 463 MobiDBLite consensus disorder prediction 443 463 - -
Vimu4g00980 463 Pfam Transferase family 21 436 - -
Vimu4g00980 463 PANTHER - 8 442 - -
Vimu4g00980 463 Gene3D - 240 445 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00980 Vimu-Chr4 8251726 8255214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00980 21 410 Monolignol Biosynthesis Gene Families AT5G48930 22.518 7.49e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00980 - - pvu:PHAVU_005G109000g 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00980 4 8251726 8255214 Vimu4g00980 4 8251726 8255214 ECH