Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00979 ATGGGAAGAGCACCTTGTTGCAACAAAAATGGTCTAAAAAAGGGTCCTTGGACACCTGAAGAGGATCTCATGCTCACCAACTACATTCAAACTCATGGACCTGGAAATTGGCGAACCCTTCCCAAGAATGCTGGTTTACAACGATGTGGCAAGAGTTGCCGTCTTCGATGGACTAATTACCTTAGACCCGATATCAAGAGAGGAAGGTTCTCGTTTGAAGAAGAAGAGACCATCATTCAGCTTCACAGTGTCTTGGGAAACAAGTACGTCTTTGATTTTGCCAAGTTTTTATCGAAAAAGGTTCAAACTCCTTTTTAA 318 0.4245 MGRAPCCNKNGLKKGPWTPEEDLMLTNYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKYVFDFAKFLSKKVQTPF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00979 105 SMART sant 13 63 IPR001005 -
Vimu4g00979 105 FunFam MYB-related transcription factor 13 66 - -
Vimu4g00979 105 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu4g00979 105 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 89 - -
Vimu4g00979 105 CDD SANT 16 61 IPR001005 -
Vimu4g00979 105 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vimu4g00979 105 SUPERFAMILY Homeodomain-like 15 90 IPR009057 -
Vimu4g00979 105 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu4g00979 105 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00979 Vimu-Chr4 8224526 8224945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00979 1 89 MYB Transcription Factor Family AT4G21440 86.517 2.63e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu4g00979 Myb_DNA-binding 7.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00979 K09422 - cave:132181249 188.348