Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00978 ATGTTACGCTTATATGTCGTTTACTCTGTGTTCATATTTAGGTGGTCGGCAATAGCAGCTAGGTTGCCAGGGAGAACCGACAATGAAATAAAGAACTATTGGAACACTCACATCAGGAAGAGGTTGCTGCGAATGGGAATCGACCCTGTTACACACGCTCCACGCCTTGATCTTCTTGACATGTCCTCGATTCTTAGGTCAGCAATCGGCAGCGTTAATCCATCGTTTCTGAATCTGCAAGGTTTGCTGAGTGCCCAGGCGTTGATGAACCCAGAGTTTCTGAAGCTCGCTGCCACTGCCACTTTGTTATCATTGAAGAATGATCACAATCAAAACCCGTCAAACTTAGTTTCACAAGTTCAACAACAATTCAATAACAGTGTAGGGAATTGTCAAGTGCAAAGCCAGGTTTTCCCTAATCAGTTTCAGACTCCAACTGAAAGCAACAACATGAACAATGGGCTTTCAATGTCCCCAGACAATTCAATTCCTTCCTATCTCGGTGAGCATAATTACCTGAACGCTCAACAAAACCAAGTTGATTTGCTACAGGACCCGGAATTGTTACATTTGTTAAACAGTGAAAACCAAAACATAGGCTACGATTCTGTTCTCTCTACGCCTTTGTCTACTCCAACTCCATTGAATTCATCATCCACTTATGTGAATAGCAGCACTGAGGAAGAGAGGGACACGTATTGCAGCGATGTATTCAAGTTAGAAATTCCAGAGAGTTTGGACATTAGTGATTTCTTGTAA 759 0.4256 MLRLYVVYSVFIFRWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSAIGSVNPSFLNLQGLLSAQALMNPEFLKLAATATLLSLKNDHNQNPSNLVSQVQQQFNNSVGNCQVQSQVFPNQFQTPTESNNMNNGLSMSPDNSIPSYLGEHNYLNAQQNQVDLLQDPELLHLLNSENQNIGYDSVLSTPLSTPTPLNSSSTYVNSSTEEERDTYCSDVFKLEIPESLDISDFL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00978 252 CDD SANT 14 38 IPR001005 -
Vimu4g00978 252 PANTHER F14D16.11-RELATED 14 203 - -
Vimu4g00978 252 ProSiteProfiles Myb-like domain profile. 1 38 IPR001005 -
Vimu4g00978 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 42 IPR017930 -
Vimu4g00978 252 Gene3D - 3 42 - -
Vimu4g00978 252 Pfam Myb-like DNA-binding domain 14 37 IPR001005 -
Vimu4g00978 252 MobiDBLite consensus disorder prediction 209 228 - -
Vimu4g00978 252 SUPERFAMILY Homeodomain-like 13 46 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00978 Vimu-Chr4 8223765 8224523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00978 14 252 MYB Transcription Factor Family AT4G21440 36.201 3.58e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu4g00978 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00978 K09422 - gmx:100812189 343.584