Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00970 ATGGATTTTAATCTCGAAAACCCTCTTGGAAACTTCCACGACCTTCCATCTGAAGCTCTTCCTTCACTCTTCCTCATCGAATCAGACCACATCCCTCCACTCCATTACTGTCAAACTCTCAAAGCAAGCGACTTCGACATCTCTGTTAGGAGAAATGTTGTCTCTTTGATTTCACAGCTCTCCTGCACTTTCGATCCAGTTCTTCCTTACCTTGCTATCAACTACTTGGATCGATTCCTCGCTAACCAAGGAATATTGCAACCAAAGCCATGGGCAAACAAGCTTCTTGCAATAGCTTGCTTTTCTTTAGCGGCCAAGATGTTGAAAGCAGAGTACTCTGCCACTGATGTCCAGGTTCTTCTGAATCATGGTGATGGAGGTGTCATTTTCGAGACACAAACAGTTCAAAGAATGGAGGGAATTGTCTTGGGGGCTCTTCAGTGGCGAATGCGTTCCATCACCCCCTTCTCTTTCATTCCCTTCTTTGTGAATTTGTTCAGGCTCAAAGACCCTGCATTTAGACAGGTTCTGAAGGATCGAGCATCTGAAATCATACTGAAGTCACAAAGAGAGATAAAGGTCTTGGAATTCAAGCCATCTGTAGTTGCTGCGTCAGCCCTTCTGTATGCTTCACATGAGTTGTTTCCCTTTCAATATCCATGCTTCTTAGGAGCAATATCCGACTGTTCATATGTTAACAAAGACATAGCCAAGGAGGAGTACGAATCTGTGTTGAATATAAATTCAACTTCAGACACCCCGGTTAATGTGTTAGACGAACATTTTCTAAGCTTGGAAAGTGAAAAAACCAACGGTGTCATACAAGAGCAGGAGTTCAAAAGAAGGAAAATTGCCGATTATGGCAACAAACGCACTGTCCCGTTTTCTCATTTTCATCAATGCTGA 906 0.4305 MDFNLENPLGNFHDLPSEALPSLFLIESDHIPPLHYCQTLKASDFDISVRRNVVSLISQLSCTFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAIACFSLAAKMLKAEYSATDVQVLLNHGDGGVIFETQTVQRMEGIVLGALQWRMRSITPFSFIPFFVNLFRLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSVVAASALLYASHELFPFQYPCFLGAISDCSYVNKDIAKEEYESVLNINSTSDTPVNVLDEHFLSLESEKTNGVIQEQEFKRRKIADYGNKRTVPFSHFHQC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00970 301 FunFam D6-type cyclin 149 242 - -
Vimu4g00970 301 Pfam Cyclin, N-terminal domain 32 150 IPR006671 -
Vimu4g00970 301 SUPERFAMILY Cyclin-like 13 150 IPR036915 -
Vimu4g00970 301 Pfam Cyclin, C-terminal domain 153 247 IPR004367 -
Vimu4g00970 301 FunFam D6-type cyclin 33 148 - -
Vimu4g00970 301 CDD CYCLIN_AtCycD-like_rpt2 153 242 - -
Vimu4g00970 301 Gene3D - 33 151 - -
Vimu4g00970 301 SUPERFAMILY Cyclin-like 134 211 IPR036915 -
Vimu4g00970 301 Gene3D - 22 228 - -
Vimu4g00970 301 PANTHER CYCLINS 50 230 IPR039361 -
Vimu4g00970 301 SMART cyclin_7 51 144 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00970 Vimu-Chr4 8153168 8154858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00970 1 285 Core Cell Cycle Gene Families AT4G03270 45.066 3.38e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00970 K18812 - gmx:100799951 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00970 4 8153168 8154858 Vimu4g00970 4 8153168 8154858 ECH
Vimu4g00970 4 8153168 8154858 Vimu5g01522 5 26472203 26475112 PCT