Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00969 ATGAGGACCCCTTCCTGGGACAACAGAGGACTTAAGAAAGGCACCTGGACTCCAGAGGAAGACAGAAAGCTTGTAGCTTATGTCACTCGATATGGCTCTTGGAATTGGCGCCAACTCCCAAGATTTGCAGGTCTGGAAAGGTGTGGAAAGAGCTGCAGACTTAGGTGGCTCAATTATCTCAGACCCAACATAAAAAGAGGAAACTACACTGACAAAGAAGAAGAAACTATAATCAAACTGCACGAAAAGCTCGGTAACAAATGGTCTGTCATTGCTACTCATTTACCCGGAAGAACAGATAATGAAATAAAGAACCACTGGCACACTACTCTCAAAAAGCGTTTTGAAAAGAAGGCAGTTTACACTGAAACAAATGAGAAAGCCTCAAAATCAAACAGTTCTGGGTCCAACCCTGACAAGGATTGCATTCAGAACAATGGTTTCTTCCTCGAAGGTTCTCACTCTCCGACAGTTTCTAAAGCCTCTGATCCTGATCCTTTGTCCCCGGAATTATCCTCAAGCGAATTCTCGTCCTCGGATTATACCACTCACCAAAATTTGTTTTTGCAAGATGCATACTTAGAGGACATGAACCAGAATATTTCGACAGAATCATTTCACATTTCTCAAGTCACAACACAAGCCAATGGTATCGACAATTTTCATGGTTCAGACGCTCCGAAAACCATGGAATGTGTTCGGCCAGAGTCTCCTCTTTCGTACTATAATGAAAATTCCGTTGTGGAAAATGACGACTTTGGCTTTCTAGAAGCAATAGAACCAATAACTGAACATTCTTGGACAGAAGCATTCGTGGCAGATATGTCCCTTTTTCCGAACGAATTACTTGTTCCTTTGGTGAACGAATCCGAATCGTACTTTTCTTGTGCGTATGATGTGGAAGATCTCTGGTGTCTGAAAAATAATTCTCATGATTTAGACGTCAACTTATTTCAATGA 960 0.4167 MRTPSWDNRGLKKGTWTPEEDRKLVAYVTRYGSWNWRQLPRFAGLERCGKSCRLRWLNYLRPNIKRGNYTDKEEETIIKLHEKLGNKWSVIATHLPGRTDNEIKNHWHTTLKKRFEKKAVYTETNEKASKSNSSGSNPDKDCIQNNGFFLEGSHSPTVSKASDPDPLSPELSSSEFSSSDYTTHQNLFLQDAYLEDMNQNISTESFHISQVTTQANGIDNFHGSDAPKTMECVRPESPLSYYNENSVVENDDFGFLEAIEPITEHSWTEAFVADMSLFPNELLVPLVNESESYFSCAYDVEDLWCLKNNSHDLDVNLFQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00969 319 Gene3D - 6 65 - -
Vimu4g00969 319 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vimu4g00969 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vimu4g00969 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 209 - -
Vimu4g00969 319 CDD SANT 68 111 IPR001005 -
Vimu4g00969 319 CDD SANT 15 60 IPR001005 -
Vimu4g00969 319 MobiDBLite consensus disorder prediction 125 178 - -
Vimu4g00969 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vimu4g00969 319 MobiDBLite consensus disorder prediction 122 178 - -
Vimu4g00969 319 Gene3D - 68 141 - -
Vimu4g00969 319 FunFam MYB-related transcription factor 12 65 - -
Vimu4g00969 319 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vimu4g00969 319 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Vimu4g00969 319 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vimu4g00969 319 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vimu4g00969 319 SMART sant 12 62 IPR001005 -
Vimu4g00969 319 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00969 Vimu-Chr4 8140861 8142019 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00969 2 142 MYB Transcription Factor Family AT3G01140 58.865 5.97e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g00969 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00969 K09422 - gmx:100811124 356.295