Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00965 ATGGTGAGAACCCCTTGTTGCGACAAAAATGGTCTCAAAAAAGGATCATGGACACAGGAGGAAGACAAGAAGTTGATCGCCTATGTTACCAGGTATGGCCACTGGAATTGGCGCCTGCTCCCCAAACTGAGATGGCTGAACTACCTAAGGCCAGATGTGAAAAGAGGGAATTTTAGTGATGAGGAAGAAGAATCCATTGTGAGACTTCACGAAAAGCTTGGTAATAGGTGGTCAACAATTGCTGCTGAATTGCCAGGGAGGACTGATAACGAGATAAAAAACCACTGGCACACCGTCCTCAAGAAGCGATTTCAACAAAAATCTGTTGGAAAAGAGGCCGTTATTTCCGAGTCATTGGAGACCTTGTCAGAGAACTACAGTGACCTCAACACAACAAATGATGATTCTGCTGCAGCAGCAACCGCCACAAATCATGAAAGTTATGATGGTTTTTCTGGTTTGGATGCATACACGGAGCCTCTGTCTGCAGATTTCTGGACAGAACCTTACTTAGTTGACAACTCCTATGTCCCACCAGAGTCGGAACCTGTTTACTTCAGTCCTATGTACGAAGTTGAAATTTGGAACCAGACTGAACTGTTCCTGCAGGAATGTGAGGGTTTATTCCAATGGTGA 636 0.4481 MVRTPCCDKNGLKKGSWTQEEDKKLIAYVTRYGHWNWRLLPKLRWLNYLRPDVKRGNFSDEEEESIVRLHEKLGNRWSTIAAELPGRTDNEIKNHWHTVLKKRFQQKSVGKEAVISESLETLSENYSDLNTTNDDSAAAATATNHESYDGFSGLDAYTEPLSADFWTEPYLVDNSYVPPESEPVYFSPMYEVEIWNQTELFLQECEGLFQW 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00965 211 Pfam Myb-like DNA-binding domain 55 100 IPR001005 -
Vimu4g00965 211 ProSiteProfiles Myb-like domain profile. 9 42 IPR001005 -
Vimu4g00965 211 Gene3D - 7 55 - -
Vimu4g00965 211 ProSiteProfiles Myb-like domain profile. 50 100 IPR001005 -
Vimu4g00965 211 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 133 - -
Vimu4g00965 211 CDD SANT 57 100 IPR001005 -
Vimu4g00965 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 39 IPR017930 -
Vimu4g00965 211 SMART sant 54 102 IPR001005 -
Vimu4g00965 211 SMART sant 13 51 IPR001005 -
Vimu4g00965 211 SUPERFAMILY Homeodomain-like 11 96 IPR009057 -
Vimu4g00965 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 104 IPR017930 -
Vimu4g00965 211 Gene3D - 56 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00965 Vimu-Chr4 8092360 8094981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00965 1 175 MYB Transcription Factor Family AT2G31180 44.660 4.01e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu4g00965 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00965 K09422 - gmx:100815765 272.322