Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00964 ACACTGAAAGATAAGGAGCTTGTAGAGATGGTGAAAAACACTAACTCTGAAAAAAATGGCCTTAGGAAAGGAACATGGACCCCAGAGGAAGATAAAAAATTGATTGCTTATGTTACGAGATACGGTCACTGGAATTGGAACCTACTCCCCAAGTATGCAGGTCTTGAGAGGTGTGGAAAAAGTTGCAGGCTAAGGTGGCTGAATTACTTGAGGCCAAATATCAAAAGAGGAAACTACACTAAAGAAGAAGATGATACCATTATCAAACTTCTACAAAGTCTCGGTAACAGATGGTCTGCCATTGCTGCTCAGCTGCCAGGAAGAACAGACAATGAAATTAAGAATTATTGGCATACCAATCTCAAGAAACGATATCAACTTCTCAAACCTCAAGTTTCCCACTCAAAGGATCAATCACCACACGAACAAGGACCAAACCCTAACAATAATATCGCACCAACTTCTCAATTCATCGATTCATGCACAACATCAACATCAACATCAACATCCTCATCCCAACTCTCTATAACTACTACTACCATTTCTGAGGATGATGATTTTTCTTTTGTGGATGCATACCAACTAGAGCCTGTGAATGAAAGCTTCTTCTTGGAACCATGTATGGTTGACATATCGTGTCTTCCTTCTGATATTTTGGTGCCTGAACCCGATTACTTCAGCCCTGTTTCTGATATAGAACTTTGGAATCACAGTAATATATACTATGCATGA 732 0.3962 TLKDKELVEMVKNTNSEKNGLRKGTWTPEEDKKLIAYVTRYGHWNWNLLPKYAGLERCGKSCRLRWLNYLRPNIKRGNYTKEEDDTIIKLLQSLGNRWSAIAAQLPGRTDNEIKNYWHTNLKKRYQLLKPQVSHSKDQSPHEQGPNPNNNIAPTSQFIDSCTTSTSTSTSSSQLSITTTTISEDDDFSFVDAYQLEPVNESFFLEPCMVDISCLPSDILVPEPDYFSPVSDIELWNHSNIYYA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00964 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Vimu4g00964 243 SMART sant 75 123 IPR001005 -
Vimu4g00964 243 SMART sant 22 72 IPR001005 -
Vimu4g00964 243 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Vimu4g00964 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Vimu4g00964 243 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 178 - -
Vimu4g00964 243 Gene3D - 23 75 - -
Vimu4g00964 243 Gene3D - 78 149 - -
Vimu4g00964 243 FunFam MYB-related transcription factor 22 75 - -
Vimu4g00964 243 CDD SANT 78 121 IPR001005 -
Vimu4g00964 243 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Vimu4g00964 243 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Vimu4g00964 243 CDD SANT 25 70 IPR001005 -
Vimu4g00964 243 MobiDBLite consensus disorder prediction 132 156 - -
Vimu4g00964 243 Pfam Myb-like DNA-binding domain 76 121 IPR001005 -
Vimu4g00964 243 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00964 Vimu-Chr4 8035221 8038839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00964 17 212 MYB Transcription Factor Family AT2G31180 51.256 1.87e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g00964 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00964 K09422 - gmx:100810385 323.553