Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00959 ATGAGAAACTTCTGTCTTTCTATTCTGGTTCTGTTCTTTTCTTTGTACATTCATCCTTCTCTTGCTGCACTCACCACCCTTTCTGCTGATGAAAAACTCACTGGTGATCAAACTCTCGTCTCCGAAGGTGGCGTCTTTGAACTGGGTTTCTTCAAGCCAGGTAATTCCTCTAACTACTATATAGGCATATGGTACAAAAAGGTCACCACAAAAACAATAGTTTGGGTGGCAAATAGAGACAACCATGTCTCTCATAAGAACACTGCCACATTAACAATATCAGGTGGTAATTTGGTTCTCTTAGATGGTTCTTCTAATCAAGTTTGGTCAACAAACACGAGTTCTCCCAGGTCAGGTTCTGTCGTGGAAGCTGTTCTACTAGATTCGGGGAATCTTGTGTTAAGAGATAGGCCTAATGATAATGCTTCGGAGCCTTTGTGGCAGAGTTTTGATCACCCCACGGACACGTTCCTTCCGGGTGGCAAAATTAAACTCGACCATAAAACGAAGAAACCACAATACCTCACTTCTTGGAAGAACACGGAGGATCCTGCTACGGGTCTCTTCTCTCTAGAACTAGACCCTGAAGGCTCCACTGCTTATTTGATTACTCGGAACAAGACTGAACAGTATTGGACAAGTGGCCCTTGGAATGGACGCATTTTCAGTTTGGTTCCAGAGATGAGGCTGAATTATATCTTCAATTTCTCGTTTGTGTCGAACGAGAACGAGAGCTATTTCACGTACTCCTTGTATAACTTCCATTATATCTCGATCAAGCAACTCACGTGGTTGGAGAATGCTCAGCAGTGGAACTTGTTTTGGACACAGCCGAGAGATCAATGCGACGTATATGCCTTTTGCGGTGCGTTTGGGAGTTGCACTGAGATGTCAATGATGGGGCCTTGTAATTGCTTGGAGGGTTTTGAGCCAAAGTCACAGTCTGATTGGAACCTCGAGGATTACTCAGGAGGGTGCCAGAGGAAAAAAAAGCTTCAATGCGAGAATTCCAATGCCTCCAACAGGGATAAGGACGGGTTCCTAGCAATTCCCAACGTGGTATTACCTAAAGATGCACAATCTGTGGGATTAGGGAATGCAGGAGAATGTGAATCAATTTGCTTGAGCATCTGCTCCTGCGCAGCTTATGCATATGACAGTAACGGGTGTTCAATTTGGGTCGGCAACCTTCTGAATGTGCAACAGTTGTCTTCAGATGATAGTAGCGGAGAAACTTTGTATCTCAAACTTGCAGCATCTGAGTTTCATGATGATAGAAGCAGCAAGGGGACGATTATCGGTGTGGTTGTGGGAGTGGTTGTTGGCATTGGGGTTCTCGTGGCCATCATTCTTTGGCGAAGGAGGAGAATGATGGCATCAAGAAAGGCTGCGGAGGGTTCGTTGGTGGCATATGGATATAGAGATTTGCAAGATGCAACGAGGAATTTCTCTGAGAAATTGGGAGGAGGAGGGTTTGGTTCTGTTTTCAAAGGAACGTTGGATGATTCCAGTGTGGTAGCAGTGAAGAAGTTGGAAAGTTTTAGCCAAAGAGAGAAACAGTTCCAAACAGAAGTTCGGACAATAGGGACAATACAACATGTTAATCTTGTCAGGCTCCATGGATTCTGCTCTGAAGGCACCAAAAGGCTGCTAGTTTATGAATACATGCCAAATGGCTCCTTGGATTTCCATTTGTTCCAGAATAAGAACTTCGTGGTATTGGACTGGAAAACGAGATACCAAATTGCTTTGGGAATAGCAAGGGGATTGGCATACCTTCATGAGAAATGCAGAGACTGTATTATACACTGTGACGTAAAGCCTGAGAACATTCTCTTAGATGCTGATTTTTGTCCCAAGATTGCAGACTTTGGCCTGGCTAAGCTTGTTGGAAGGGATTTCAGCAGGGTCCTCGCAACAATTAGAGGAACAAAAAACTATCTTTCTCCAGAATGGATTTCTGGGGTGCCTATCACTGCCAAAGCCGACGTGTACAGCTATGGAATGATGCTTTTTGAGTTTGTGTCAGGTAGGAGGAACTCTTATGAGCTATATGATTCTGAAGATGGAAAATTTAGGTTCTTTCCTACCAGGGCAGCAAACATAGTTGCCCGTGGTGGCAATGTTCTTAGCCTTTTGGATCCTTGTTTGGAACAAAATGCTGACGCCGAGGAGGTCACTCGAATGGTAACCGTTGCTTCCTGGTGCATCCAAGACAATGAGACTCACCGGCCAACCATGGGTCAGGTTGTTCATATCCTTGATGGGATCTTGGACGTGAATTTACCTCCAATTCCAACATTTCCTGAGGTGTCTGATCACTACTACTAG 2331 0.4453 MRNFCLSILVLFFSLYIHPSLAALTTLSADEKLTGDQTLVSEGGVFELGFFKPGNSSNYYIGIWYKKVTTKTIVWVANRDNHVSHKNTATLTISGGNLVLLDGSSNQVWSTNTSSPRSGSVVEAVLLDSGNLVLRDRPNDNASEPLWQSFDHPTDTFLPGGKIKLDHKTKKPQYLTSWKNTEDPATGLFSLELDPEGSTAYLITRNKTEQYWTSGPWNGRIFSLVPEMRLNYIFNFSFVSNENESYFTYSLYNFHYISIKQLTWLENAQQWNLFWTQPRDQCDVYAFCGAFGSCTEMSMMGPCNCLEGFEPKSQSDWNLEDYSGGCQRKKKLQCENSNASNRDKDGFLAIPNVVLPKDAQSVGLGNAGECESICLSICSCAAYAYDSNGCSIWVGNLLNVQQLSSDDSSGETLYLKLAASEFHDDRSSKGTIIGVVVGVVVGIGVLVAIILWRRRRMMASRKAAEGSLVAYGYRDLQDATRNFSEKLGGGGFGSVFKGTLDDSSVVAVKKLESFSQREKQFQTEVRTIGTIQHVNLVRLHGFCSEGTKRLLVYEYMPNGSLDFHLFQNKNFVVLDWKTRYQIALGIARGLAYLHEKCRDCIIHCDVKPENILLDADFCPKIADFGLAKLVGRDFSRVLATIRGTKNYLSPEWISGVPITAKADVYSYGMMLFEFVSGRRNSYELYDSEDGKFRFFPTRAANIVARGGNVLSLLDPCLEQNADAEEVTRMVTVASWCIQDNETHRPTMGQVVHILDGILDVNLPPIPTFPEVSDHYY 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00959 776 PANTHER OS07G0415500 PROTEIN 4 766 - -
Vimu4g00959 776 SMART ntp_6 342 417 IPR003609 -
Vimu4g00959 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 218 IPR036426 -
Vimu4g00959 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Vimu4g00959 776 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Vimu4g00959 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
Vimu4g00959 776 SMART serkin_6 481 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00959 776 Gene3D - 21 151 IPR036426 -
Vimu4g00959 776 FunFam Receptor-like protein kinase 4 449 555 - -
Vimu4g00959 776 Pfam Protein kinase domain 484 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00959 776 CDD STKc_IRAK 487 757 - -
Vimu4g00959 776 ProSiteProfiles PAN/Apple domain profile. 334 418 IPR003609 -
Vimu4g00959 776 CDD PAN_AP_plant 331 418 - -
Vimu4g00959 776 Gene3D Phosphorylase Kinase; domain 1 448 555 - -
Vimu4g00959 776 CDD B_lectin 30 153 IPR001480 -
Vimu4g00959 776 PIRSF SRK 1 775 IPR024171 GO:0004674
Vimu4g00959 776 Pfam PAN-like domain 342 400 IPR003609 -
Vimu4g00959 776 Pfam D-mannose binding lectin 72 179 IPR001480 -
Vimu4g00959 776 Gene3D Transferase(Phosphotransferase) domain 1 556 762 - -
Vimu4g00959 776 Pfam S-locus glycoprotein domain 212 313 IPR000858 GO:0048544
Vimu4g00959 776 ProSitePatterns Protein kinases ATP-binding region signature. 487 510 IPR017441 GO:0005524
Vimu4g00959 776 SMART blect_4 30 153 IPR001480 -
Vimu4g00959 776 FunFam Serine/threonine-protein kinase 556 762 - -
Vimu4g00959 776 SUPERFAMILY Protein kinase-like (PK-like) 469 768 IPR011009 -
Vimu4g00959 776 ProSiteProfiles Protein kinase domain profile. 481 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00959 Vimu-Chr4 7977857 7980212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00959 441 764 Receptor kinase-like Gene Family AT5G20050 41.111 2.21e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu4g00959 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00959 - - gmx:102667456 1190.64