Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00953 ATGAAGAACTGCGAGCTCTGCAAGGTTCCGGCTCGGACCTTCTGTGAGTCTGACCAGGCCAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGTGCCAACTTCCTCGTCGCCAGACACACGCGCACGCTCCTCTGCCACACCTGCCAGTCACCCACGCCCTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACCGTCTCCCTCTGCGAGAGGTGCGCCGGGGGAACCGCCGAACAAGGTCAGGAGAGCCAAGGAGGCAATGACGACGACTTAGACACAGACGAAGATGACTACGACGATGATGATGAGACCGACGACGAGGTCGCCGCCGACGAAGACGGAGAAAACCAGGTTGTCCCTTGGTCCTCCGCGCCTCCGCCACCTGCTCCGAGCTCTTCCAGCAGCGAAGAGTCGGTTAGCCGATGCAACAACGCGTACGAGGAGGATGTTTCGACCACATTGAAACGACGTCGTGAGGACAATGATTTCGAGTGTTCGAATTCGAACAATTGGGGTTGTCAACTGAGCGAAGTGAAGAGAGGAGGCTGGTTGGTTCGGTTGCGGCGGCGAACAGCCGCCGCAGATGACGGTCTTACTGTTGAGCAACGGAGTGGTAGGATGGTGACTCCCTACGGCTGCGGTGATGATGATAGAGCCTCTGAAGACGTTTGA 672 0.5938 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHTCQSPTPWKASGAALGNTVSLCERCAGGTAEQGQESQGGNDDDLDTDEDDYDDDDETDDEVAADEDGENQVVPWSSAPPPPAPSSSSSEESVSRCNNAYEEDVSTTLKRRREDNDFECSNSNNWGCQLSEVKRGGWLVRLRRRTAAADDGLTVEQRSGRMVTPYGCGDDDRASEDV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00953 223 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vimu4g00953 223 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Vimu4g00953 223 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Vimu4g00953 223 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 178 - -
Vimu4g00953 223 CDD Bbox1_BBX-like 4 45 - -
Vimu4g00953 223 MobiDBLite consensus disorder prediction 85 113 - -
Vimu4g00953 223 MobiDBLite consensus disorder prediction 77 153 - -
Vimu4g00953 223 MobiDBLite consensus disorder prediction 133 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00953 Vimu-Chr4 7920793 7921654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00953 2 128 C2C2-CO-like Transcription Factor Family AT5G54470 52.632 2.44e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu4g00953 zf-B_box 9.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00953 - - gmx:100801024 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00953 4 7920793 7921654 Vimu4g00953 4 7920793 7921654 ECH
Vimu4g00953 4 7920793 7921654 Vimu5g01537 5 26771649 26772308 PCT