Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00951 ATGAGAAGTGAAGGGGTTGTGTTGTCCTTCTCCTTTCTTCTTCTCTGGCTACCCATATGCTTCCAAATATGTTTGGGTGGAGATACTCTGAAGGCAAACCAGTTCATAACTCCGGACTCCCAAGGAAACCTTGTTTCATCAAACGCCACATTTGAGCTGGGCTTCTTTTCTCCTGGTGAAAAAAGTGGAGGGAAATACCTGGGGATTTGGTATCACGCCTTGGAACCACAAACAGTGGTGTGGGTTGCCAACAGAGATCATCCTGTTCCCGATTCCACTGGAGTTTTTCGAATTGCGGAGGATGGACATCTTGTGGTAGAATATGCATTCGGAAGCCTCTGGTCTTCTAAACTTAGAGAATCCTCGTCCTCTAACAGAACACTGCAGCTCCTAGATTCTGGGAATCTTGTACTAAAAGAGGATGACTCTGAAACGACATACCTGTGGGAAAGCTTCAAGAACCCAACAGACACGTTTCTTCCCGGCATGATAATGGACGCGACTTTGTCGTTGACTTCTTGGAGGAACTCCTCTGACCCAGCAACTGGGAACTTCACCTTTATGCTGAAACAACAGGCTGGGAAACGAAGCTTCGTGGTGCAATATCATTCACAAATCCACTGGGCACCGGATGAACTTGGCACAGAAGCGGCTTCCCAGATGGTATTTAATTTGTTGTACAACGACACCTGGAATACTAAATCGTACAATTATTCTAACGTAACACTCTTCAATTCAAAACCTAACATGTACAAAATGTCAAGACTGTTAATGAAATATAGCGGGGAGATAGAGTTTCTGAAGTGGGATGAGGAAGAATCAGATTGGAATACGAAATGGTTTGCGCCAGAGGACAAGTGTGACATATATAATTATTGCGGGAGATTTGGCATATGTAACAAACAGAACATCCTTTGGTGCAAATGTTTGCCAGGATTCAGTTCTATCCAACAATTTCATCCGGAGTCCGAAGGATGTAGAAGAAAATCAACTCCCTGTAGCAGTACCATAGAGGACGTGACGTTCGTGAACTTAACCAAAATAAAAGTGGGCGACCCGGACCAAGAAATTTATGCTCAAACAGAAGGAGAATGTCAATCCATGTGCATCAACATGTGTCCCCAATCACAGCAGTGTCAGGCATATTCGTTTAATAGTTCTACATACGGTGACCGTAGTTCAAACTCGTGCAATATCTGGACGCGGCCTTTAACTTCTCTTGTTGAGAACTACCAGCGTGGTCGTGATCTTTCTATCTTGGTTAAGACATCAGATTTAGCACCAACTGCAAAATCGTGTGAACCTTGCGGGACATATGCGATTCCTTATCCCCTGAGCACGGGACCAAACTGTGGAGACCCCATGTACAACAATTTCAATTGCGACAAATCCACTGGTAATGTTAGTTTCACGATCCCCGGAGGAAAATCATACCCAGTAGCTAGGATCAACGAAGATACCAGATCTTTTTTCATTCAAACAGACGATTTATCTTCGTTTGATTCCAGTTTCCGCAATCAAGATAGCACTGATTTTCCGTTTAATATAACGGATTTCATTGAAGATGTAATAAAAATCAATTGGCGACCAGCTCCAGAACCGCAGTGTAGTAGGCTTATAGATTGCATAAATTGGCCACACTCGACATGCAAACGAACAAGGGAAGGTAGAAGTAGGTGTCATTGTGATTCAAAGTACAATTGGAATGACACAATTATGAGCTGCACCCGAGAAGAGCGATCAGGAAATAATTCAACTCAACTGGAATTAATTCTTTTAGCAACTCTTAGTTCTCTGGCTGCTGTGACATGCATAATAGCCTTTGGCATAGTGTGGAGAAAGAAAAATGCCCATCTAGCAAGCTCCCAAATTCAGGATAGCTTATACGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAACGACATTGAAGGCATTGAAGTGCCCTGTTATACTTTTGCAAGCATTCTAGCAGCTACAGATAATTTCTCAGATTCTAACAAGCTTGGAAAAGGAGGTTATGGACCTGTATACAAGGGAACGTTTTATGGAGGTCATGATATAGCTGTAAAGAGACTTTCAAATGTTTCCACTCAAGGCTTACAAGAATTCAAAAATGAGGTTATTCTGATTGCCAAACTTCAACACCGGAACCTTGTCAGACTAAGGGGCTATTGCATAAAAGGAGATGAAAAAATCTTACTTTATGAATACATGCCAAACAAGAGCTTGGACTCGTTCATATTTGATTGGCCAATGCGATTCAAGATAATTGTAGGCATTGCGCGAGGCATGCTCTATCTTCACCAAGATTCCAGATTGAGAGTGATTCATAGAGATTTAAAGACTAGCAACATTCTTCTAGATGAGGAGATGAATCCAAAGATATCAGACTTTGGTTTAGCCAAAATATTTGGGGGAAAAGAAACTGAAGCCAAGTATGCATTGGATGGACTTTTCTCAATCAAATCTGATGTTTTCAGCTTTGGAGTAATCCTTCTGGAGATTCTCAGTGGAAAAAGGAACACAGGATTTTATGAATCCAAACAAATTTCTAGCCTTTTGGGTTATGCATGGAAGTTGTGGACAGAGAATAGGCTTCTGGATTTAATGGATTCATGTATTGGTGAAACCTGCAACGAAAATCAATTCATGAAGTGTGCAATTATTGGGCTATTATGCATCCAAGATGAACCAATTGATCGACCCAGTATGTCAAATGTTTTGTTCATGCTTGACAGAGATACAACAACCATGCCATTGCCAATTCCCACACAACCAACATTTTTTGTGAAAAAGCATTATTCTAGCTCAGCTTCCTCTTCTAGCAAACCAGACACAAGTCTGCAATTTGATACCAGTTATCAACAAGGTCGATAG 2898 0.4141 MRSEGVVLSFSFLLLWLPICFQICLGGDTLKANQFITPDSQGNLVSSNATFELGFFSPGEKSGGKYLGIWYHALEPQTVVWVANRDHPVPDSTGVFRIAEDGHLVVEYAFGSLWSSKLRESSSSNRTLQLLDSGNLVLKEDDSETTYLWESFKNPTDTFLPGMIMDATLSLTSWRNSSDPATGNFTFMLKQQAGKRSFVVQYHSQIHWAPDELGTEAASQMVFNLLYNDTWNTKSYNYSNVTLFNSKPNMYKMSRLLMKYSGEIEFLKWDEEESDWNTKWFAPEDKCDIYNYCGRFGICNKQNILWCKCLPGFSSIQQFHPESEGCRRKSTPCSSTIEDVTFVNLTKIKVGDPDQEIYAQTEGECQSMCINMCPQSQQCQAYSFNSSTYGDRSSNSCNIWTRPLTSLVENYQRGRDLSILVKTSDLAPTAKSCEPCGTYAIPYPLSTGPNCGDPMYNNFNCDKSTGNVSFTIPGGKSYPVARINEDTRSFFIQTDDLSSFDSSFRNQDSTDFPFNITDFIEDVIKINWRPAPEPQCSRLIDCINWPHSTCKRTREGRSRCHCDSKYNWNDTIMSCTREERSGNNSTQLELILLATLSSLAAVTCIIAFGIVWRKKNAHLASSQIQDSLYESERHVKGLIGLGSLEENDIEGIEVPCYTFASILAATDNFSDSNKLGKGGYGPVYKGTFYGGHDIAVKRLSNVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDWPMRFKIIVGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETEAKYALDGLFSIKSDVFSFGVILLEILSGKRNTGFYESKQISSLLGYAWKLWTENRLLDLMDSCIGETCNENQFMKCAIIGLLCIQDEPIDRPSMSNVLFMLDRDTTTMPLPIPTQPTFFVKKHYSSSASSSSKPDTSLQFDTSYQQGR 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00951 965 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 636 744 - -
Vimu4g00951 965 ProSiteProfiles PAN/Apple domain profile. 333 424 IPR003609 -
Vimu4g00951 965 FunFam Os07g0541700 protein 745 822 - -
Vimu4g00951 965 CDD PAN_AP_plant 333 421 - -
Vimu4g00951 965 SUPERFAMILY Protein kinase-like (PK-like) 651 936 IPR011009 -
Vimu4g00951 965 ProSiteProfiles Protein kinase domain profile. 669 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00951 965 SMART blect_4 27 155 IPR001480 -
Vimu4g00951 965 SMART ntp_6 337 423 IPR003609 -
Vimu4g00951 965 SMART serkin_6 669 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00951 965 CDD STKc_IRAK 675 920 - -
Vimu4g00951 965 Gene3D Phosphorylase Kinase; domain 1 643 744 - -
Vimu4g00951 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Vimu4g00951 965 Gene3D - 23 153 IPR036426 -
Vimu4g00951 965 Pfam PAN-like domain 341 406 IPR003609 -
Vimu4g00951 965 Pfam S-locus glycoprotein domain 237 314 IPR000858 GO:0048544
Vimu4g00951 965 Pfam Protein tyrosine and serine/threonine kinase 672 914 IPR001245 GO:0004672|GO:0006468
Vimu4g00951 965 CDD B_lectin 44 155 IPR001480 -
Vimu4g00951 965 Gene3D Transferase(Phosphotransferase) domain 1 745 925 - -
Vimu4g00951 965 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 909 - -
Vimu4g00951 965 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Vimu4g00951 965 MobiDBLite consensus disorder prediction 943 965 - -
Vimu4g00951 965 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 180 IPR036426 -
Vimu4g00951 965 Pfam D-mannose binding lectin 78 167 IPR001480 -
Vimu4g00951 965 FunFam Receptor-like serine/threonine-protein kinase SD1-8 22 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00951 Vimu-Chr4 7907144 7911084 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00951 659 938 Receptor kinase-like Gene Family AT4G23140 52.273 1.46e-105 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g00951 PK_Tyr_Ser-Thr 5.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00951 - - var:108332879 1495.33