Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00950 ATGTTGTTTTGTCCTTCTCCTTTCTTCTTCTCTGCTAACCAGAGCATAACTCTCCACCACTCCAATGGAAACCTTGTTTCATCAAACGCCACATTTGAGCTGGGCTTCTTTTCTCCTGGTGAAAAAAGTGGAGGGAAATACCTGGGGATTTGGTATCACGCCTTGGAACCACAAACAGTGGTGTGGGTTGCCAACAGAGATCATCCTGTTCCCGATTCCACTGGAGTTTTTCGAATTGCGGAGGATGGACATCTTGTGGTAGAATATGCATTCAAAAGACGCTGGTCTTCTGATCTTGAAGCATCCTCGTCCTCAAACAGAACACAGCAGCTCCTAGATTCTGGGAATCTTGTACTAAAAGAGGACGACTCTGAAACGACATACCTGTGGGAAAGCTTCCAACACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGATGCGACTTTGTCGTTGACTTGTTGGAGAGACTCCTCTAACCCAGCACCTGGGAACTTCACCTTCAAGCTGACTGAAAAGGCTGAGACACGGAGCTTCGTTGTGCAATATCAATCACAAATCCACTGGGCACTTGATGAACTTGACACAGAAGCGTCTTCCCAGGTCGTATTTAATTTGTTGAACAACGACATCTGGAGTACTAAAACGTACAATTATTCTAACAAAACAGTCTTCGTATCACAACCTTACATGTACAATAAATCAAGGCTTTTGATGAATTCTAGCGGGGAGATAGTGTTTTTGGAGTGGGATGAGGAAGACTCAAATTGGACTAAGCTATGGTCTGGGCCAGAGAACAAGTGTGACATACCTGATTATTGCGGGAGCTTCGGCCTATGTAGCAGAGATAACCACATTCCGTGCAAATGTTTGCCAGGATTCAGTTCTATTCAAGGTTTTCCTTCTGATCGAGAATCGGAGTCCCAAGGATGTGAGAGAAAATCAACGACGTGTACCAGTACCAACGAAGACGTGATGTTCCTGAACTTAACCAACATAAAAGTGGGCGACCCAGACCAAAAAATTTATACTCAAACGGAAGCAGAATGCCAATCCTTCTGCATCGACATGTGTCCCGAATCACAGTGCCAGGCATATTCATTTAATATTTCGACATATCGCGGCAATAATTCATACTCGTGCAATATCTGGACGCGGCCTTTACCTTCTCTTGTCGAGAACTACCTACGCGGTCGTGATCTTTCTATCTTGGTTAAGACATCAGATATAGCACTAACTGCTAAATCTTGTGAACCTTGCGGCGCATATGCGATTCCCTATCCGCTGAGAACTGGACCAAACTGTGGAGACCCCATGTACAACAACTTCAATTGCGACAAACCCACTGGCAAAGTTAGTTTTATGATTCCCGGAGGAATATCATATCCAGTAACTTGGATCGATGAAGATTCCAGAATGTTTCTCATTCAAACAGACAATTTCTATTCATTCAATTACAGTTTCAGCAGTCAAAATAGCACTGATTTTCCGTTTAGTGAAGCCGACTTCGTTACAGATCGCCAGAACCACCGTGTAGCAAGCTTATGGATTGCATTAATTGGCCACATTCGACATGCAAACGAACAGGGGAAGGTGGAAGTAGAAGAGCCATCAGGAAATGATTCAACTCTACTAAAATTGATTCTTTTAGCATCTGTGGGTTCCTTGGCTGCTGTGACATGCATAATAGCATTTGGCATCGTGTGGAGAAAGAAAAAAGCCCATCGAGCAAGCACCCGAATTCAGGAGAGCTTGTATGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTTCCCTTTTACACTTTTGCAAGCATTCTCGCAGCTACAGATAATTTTTCGGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAAAGTTTCCTGGAGGTCAAGAAATAGCTGTAAAGAGACTTTCAAGTGTCTCGACTCAAGGCCTGCAAGAATTCAAAAATGAGGTAATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATTAAAGGGGATGAAAAAATCTTACTTTATGAATACATGCCAAATAAGAGCTTGGATTCATTTATATTTGGTAAGACTCCATATTCCATCACACAACCTTCTTTAAACCGTAGTCGATCTATACTTTTGGATTGGCCAATGCGGTATGAGATAACAGTAGGCATTGCACGAGGCATGCTATACCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGACATGAAAACCAGCAACGTTCTCTTAGACGAGGAAATGACTCCAAAGATATCTGACTTTGGTCTTGCCAAAATATTTGGAGGAAAAGAAACTGAAGCAAGTACAGGGAGAGTGATGGGAACCTAG 2412 0.4279 MLFCPSPFFFSANQSITLHHSNGNLVSSNATFELGFFSPGEKSGGKYLGIWYHALEPQTVVWVANRDHPVPDSTGVFRIAEDGHLVVEYAFKRRWSSDLEASSSSNRTQQLLDSGNLVLKEDDSETTYLWESFQHPTDTFLPGMKMDATLSLTCWRDSSNPAPGNFTFKLTEKAETRSFVVQYQSQIHWALDELDTEASSQVVFNLLNNDIWSTKTYNYSNKTVFVSQPYMYNKSRLLMNSSGEIVFLEWDEEDSNWTKLWSGPENKCDIPDYCGSFGLCSRDNHIPCKCLPGFSSIQGFPSDRESESQGCERKSTTCTSTNEDVMFLNLTNIKVGDPDQKIYTQTEAECQSFCIDMCPESQCQAYSFNISTYRGNNSYSCNIWTRPLPSLVENYLRGRDLSILVKTSDIALTAKSCEPCGAYAIPYPLRTGPNCGDPMYNNFNCDKPTGKVSFMIPGGISYPVTWIDEDSRMFLIQTDNFYSFNYSFSSQNSTDFPFSEADFVTDRQNHRVASLWIALIGHIRHANEQGKVEVEEPSGNDSTLLKLILLASVGSLAAVTCIIAFGIVWRKKKAHRASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDNFSDSNKLGRGGYGPVYKGKFPGGQEIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFGKTPYSITQPSLNRSRSILLDWPMRYEITVGIARGMLYLHQDSRLRVIHRDMKTSNVLLDEEMTPKISDFGLAKIFGGKETEASTGRVMGT 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00950 803 ProSiteProfiles Bulb-type lectin domain profile. 10 132 IPR001480 -
Vimu4g00950 803 Pfam S-locus glycoprotein domain 217 295 IPR000858 GO:0048544
Vimu4g00950 803 Pfam PAN-like domain 322 388 IPR003609 -
Vimu4g00950 803 CDD B_lectin 21 136 IPR001480 -
Vimu4g00950 803 ProSiteProfiles Protein kinase domain profile. 626 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00950 803 Gene3D Transferase(Phosphotransferase) domain 1 702 803 - -
Vimu4g00950 803 Gene3D Phosphorylase Kinase; domain 1 600 701 - -
Vimu4g00950 803 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 798 - -
Vimu4g00950 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 593 701 - -
Vimu4g00950 803 Pfam D-mannose binding lectin 59 148 IPR001480 -
Vimu4g00950 803 SMART ntp_6 322 407 IPR003609 -
Vimu4g00950 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Vimu4g00950 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 155 IPR036426 -
Vimu4g00950 803 FunFam Os07g0541700 protein 702 803 - -
Vimu4g00950 803 FunFam Receptor-like serine/threonine-protein kinase SD1-8 9 133 - -
Vimu4g00950 803 ProSiteProfiles PAN/Apple domain profile. 318 408 IPR003609 -
Vimu4g00950 803 SUPERFAMILY Protein kinase-like (PK-like) 609 803 IPR011009 -
Vimu4g00950 803 Gene3D - 11 134 IPR036426 -
Vimu4g00950 803 PIRSF SRK 2 422 IPR024171 GO:0004674
Vimu4g00950 803 PIRSF SRK 488 803 IPR024171 GO:0004674
Vimu4g00950 803 SMART blect_4 17 136 IPR001480 -
Vimu4g00950 803 SMART serkin_6 626 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00950 803 Pfam Protein kinase domain 627 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00950 Vimu-Chr4 7898497 7901602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00950 552 803 Receptor kinase-like Gene Family AT4G23320 49.225 3.83e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g00950 Pkinase 2.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00950 - - var:108332879 1270.37