Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00949 ATGGCTCCAGAGTATGCTTTGGATGGACTTTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTGGTCCTACTGGAGATTCTTAGTGGAAAAAAGAACACAGGATTCTATGAGTCCAAACAAATTTCTAGCCTTTTGGGTTATGCATGGAAGTTATGGTCAGAGAACAAGCTATTGGATTTAATGGATTCTAGTCTTGGTGAAACATGCAACGAAAATCAATTTTTCAAATGTGCAGTTATTGGATTATTATGCATACAAGATGAACCAATTAATCGACCTACCATGTCAAATGTTTTGTACATGCTTGACGTAGAGACAACAACCATGCCAATTCCCACCCAGCCAACATTTTTTATGAACAAGCGTTATTCAAGTTCAGCTTCTTCTTCTAGTAAACCAGAAACAAATCTGCAATTTGATAGCAGTTACGAACAAGGGATTGTAGGGGTGACTCTAATAACACCGAATATACTAGTGCTAGATGTGAAGGAAGAAAAGGAAAAAGGGGATGATGCTACCAATGCCAACAATGCCTTAAGTCACAAACAACATCGACAAGATTGGAAGGAGGTGAGGACAGTGGCAATTTGGTGTTTGGTGCTCGAAGTCGTTGCCATAACTCCTGTCTTGGAGCTCCCGTTCCGCTCCGATGCTAAGGTGGTAGTGGAGGAGGCCCCTTTCGAACTCGATAATTTGTATGATACAAGAAAATCTACATTTGGTTATGTGTATCTTTTAGTTGAAGGAGGGATTTCATGGAAAAGTGTGAAGCAGTTCATCATTGTTGCACCTACCATGGAAGATGAATTTGTGAAAAGCTTTGAGGACATGAACGTCGATCAAAGGAGAAAGAAAATCATAAGACAATTATTGAGTGAAACCAAGAAGCGAATGGAGGATGAGGATTGTCGCAACCGAAAAATCGCGACGGGACGACGACGATCCAAAAAAGGAAATGATTTCGAAAAAGAGATTTTGGAATCGCCACCATAG 996 0.4026 MAPEYALDGLFSVKSDVFSFGVVLLEILSGKKNTGFYESKQISSLLGYAWKLWSENKLLDLMDSSLGETCNENQFFKCAVIGLLCIQDEPINRPTMSNVLYMLDVETTTMPIPTQPTFFMNKRYSSSASSSSKPETNLQFDSSYEQGIVGVTLITPNILVLDVKEEKEKGDDATNANNALSHKQHRQDWKEVRTVAIWCLVLEVVAITPVLELPFRSDAKVVVEEAPFELDNLYDTRKSTFGYVYLLVEGGISWKSVKQFIIVAPTMEDEFVKSFEDMNVDQRRKKIIRQLLSETKKRMEDEDCRNRKIATGRRRSKKGNDFEKEILESPP 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00949 331 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00949 331 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 138 - -
Vimu4g00949 331 Pfam Protein tyrosine and serine/threonine kinase 1 100 IPR001245 GO:0004672|GO:0006468
Vimu4g00949 331 SUPERFAMILY Protein kinase-like (PK-like) 1 133 IPR011009 -
Vimu4g00949 331 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
Vimu4g00949 331 MobiDBLite consensus disorder prediction 297 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00949 Vimu-Chr4 7890063 7898409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00949 1 143 Receptor kinase-like Gene Family AT4G23140 46.853 1.35e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g00949 PK_Tyr_Ser-Thr 2.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00949 - - var:108332879 284.263