Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00943 ATGTTAGCGAAAGCACATAGTAAGGGGGATGGAACCAAATCCCTGGCTAAGATACTGGCGAAATGGAAAGAGTATAATGCCCAGCTTGATTCCTGTGATGATGCGGATAAGCCAGTTCGCAAAGTTCCTGCCAAGGGATCAAAAAAAGGGTGTATGAAAGGTAAAGGTGGGCCTGAGAACTCGCGGTGTAATTACAGAGGTGTTAGACAGAGGACTTGGGGAAAGTGGGTTGCTGAAATAAGAGAGCCGAACAGAGGGAATAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCTTGTGCCCGTCTTAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCTGAGGAATCCTCCAAAGATTCTCCATTGGCGAATCATTCTGGTTCCTCAATGGCTGTGTCTGCAAATGAATCCATGGTTTCACTTAGTAACTCTAAGGGGGGAGGAGCAGAAGAGGATGTTGATATGGAGCCCATATCCTTATCCTTAAGTGTAAAACACGAGAACGGTGAAGGTGAATCAGGGATAAGTTCATCCCCTCCTTCTTCATAG 597 0.464 MLAKAHSKGDGTKSLAKILAKWKEYNAQLDSCDDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPLANHSGSSMAVSANESMVSLSNSKGGGAEEDVDMEPISLSLSVKHENGEGESGISSSPPSS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00943 198 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Vimu4g00943 198 MobiDBLite consensus disorder prediction 127 160 - -
Vimu4g00943 198 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Vimu4g00943 198 MobiDBLite consensus disorder prediction 127 198 - -
Vimu4g00943 198 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vimu4g00943 198 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vimu4g00943 198 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Vimu4g00943 198 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Vimu4g00943 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 160 - -
Vimu4g00943 198 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vimu4g00943 198 MobiDBLite consensus disorder prediction 40 59 - -
Vimu4g00943 198 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vimu4g00943 198 FunFam Ethylene-responsive transcription factor 2 63 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00943 Vimu-Chr4 7830722 7831318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00943 8 121 AP2-EREBP Transcription Factor Family AT2G40350 66.102 1.24e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu4g00943 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00943 - - gmx:100527471 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00943 4 7830722 7831318 Vimu5g01548 5 26900262 26900768 PCT