Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00938 ATGCACGTCACGTCCTCACATAGCCACATGAAAGCTGAGCTTAAGGGCACGTCCATTTCTTTTCAAAACCCTAATACTCTCTTTAACACACCTCACAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTGGGAAGCCTTGATGGAGCTTGTATTGAGAAGCTCTTGCTCCACTGTGCCAGCGCTTTGGAGAGCAACGACATCACTTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACCAACCAAAGACTCACCTCGTGGTTTCTCAGAGCATTAATCTCTAGGGCTTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGCTTATGAGCGTCACCGAGCTGGCCGGGTATGTGGATCTCATTCCTTGGCATAGATTTGGGTATTGTGCATCCAATAACGAAATTTTCAAAGCAATAACGGGGTACCAAAGAGTACATATTCTAGATTTTAGTATAACCCATTGTATGCAATGGCCTACTTTTATAGATGCATTGGCCAAAAACCCTGAAGGACCTCCTTCACTCAGAATCACAGTTCCATTTTGTAGACCACACGTACCCCCCCTGGTCAATGTATCTATACACGAGGTTGGTTTACGTTTAGGGAATTTCGCCAAGTTCAGAGATGTCCCTTTTGAATTCAACGTTATAGGAAACACAGGACCGTTAACACCTGTGGAATTGAGGGATGAATCATCTAACTTTCATTTTGAAGCAATGTTAAGTCTCTTGAATCCTACTACGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTGCGCTATTTGTCTGATGATAGAAAGGGAAGCTGCCAAAGTCTTTCCCTTAGGGATGCTTTTTTAAATCTAATAAAAGGTCTTAACCCCCGGATTGTGCTCTTGGTTGACGAAGATTGTGACCTTAGTGCATCTAGTCTCACGTCAAGAATCACCACATGTTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACCTTTTTGCCTAAAGATAGTGGTCAGAGGGCAGAGTTTGAATCCGACATAGGCCAGAAGATTGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATCGAGAGGTTGGAGTGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTTGGTTACCTCAGTGTTCCATTTTGTGATGAAACTGTTAGGGAAGTTAAAGGTTTGTTAGATGAGCATGCCAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGCTAGTTCTCACATGGAAAGGAAACAGCTGTGTCTTTGCGACAGCTTGGGTCCCCTGTGAAATAAGGGATCATGTTGGAATGGATGCAAGTCTGCCTTAA 1383 0.4432 MHVTSSHSHMKAELKGTSISFQNPNTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIFKAITGYQRVHILDFSITHCMQWPTFIDALAKNPEGPPSLRITVPFCRPHVPPLVNVSIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTPVELRDESSNFHFEAMLSLLNPTTLNLREDEALVINCQNWLRYLSDDRKGSCQSLSLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSGQRAEFESDIGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLSVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEIRDHVGMDASLP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00938 460 ProSiteProfiles GRAS family profile. 42 445 IPR005202 -
Vimu4g00938 460 Pfam GRAS domain family 52 444 IPR005202 -
Vimu4g00938 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 434 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00938 Vimu-Chr4 7721762 7723144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00938 27 447 GRAS Transcription Factor Family AT3G49950 43.953 1.07e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu4g00938 GRAS 1.3e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00938 - - gmx:100802093 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00938 4 7721762 7723144 Vimu4g00938 4 7721762 7723144 ECH