Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00936 ATGGGCGATGGAGGCGTCCCGTGCATGCCTTTGCAGTATATTATGGAGAGGTTGCCGAGTTCCGAGAAGACTGTTGTGTGCGGAGGCAAGAGTGGGAATGGCTTCAATTCCAAGTTGTTCAAGTTTGCTGGCAATGAGAGGAGGAAGATGAAGGCGAGAAAGAGTGAATTGGGGTTGGACAGAGTGAACAAGAGGAGCACCAATGATGTTGAGAATGGTGGCGAAGTGGAGAAGCAGCAAGAGAAGGTGCAGAAGGAGGAAGTGGAGGAAGGTGAATTGGGCACTTTGAAGTGGCCTAGGACTGACCTGGAAAATGGGGAGTTCGTGCCTGAGATGCCGCCACCAGCCCAACCGAGGAAGGGCGAGATTGAGAACGGGGAGATTGTGAGTGAGAAGTGGAAAGGAAGGGAGCTGGAGAAGGGGGAGATTGCTTCTGGGAAATGGAGGAAAGAGGATGTTGAAAGAGGGGAGATAGTTCCTGAGAAGGGTGGTAGGAAAGGGGAAGCTGAGAGAGGTGAATATGGGTCGTGGAGAGGTGTAAATGATGAAATTGAGAAGGGAGAATTCATTCCGGATAGATGGTACAAGGGGGATTATGACAGTAGAATCCGCAGGTACCATTCAGGTAGGGACAAAGGGTGGAAAATTGAACGTGAACGTGAAAGTACACCTTCTTCTGGGAGATATTCTGGGGATGATTTTTTTAGGAAGAAGGATTTGAATATTCGTGGGAGTCAGCATCCTAAAAGTTCTCCCAGGTGGGAGGGTGGACAACAGCGGAATGTAAGGATCAGTTCTAAGATTGTGGATGACGAGAAGAACGTTCACAGCAATGGTAAGGACCATGCACGAGATTACACTTCTGGAAGTCGGTTGAAGAGGCTTGGTAATGATACTGACAGCTATGAGCGGAAGCATTCTGCAGATTATGCCGGTTTAAAAAGCCGAAGACTTTCTGATGATAGCTGTCGCCAAGTTTATTCAGAAAACTATTCTCGTCGTTCTGTGGAACGGTCTTACCGAACTAATAATGCTACCAAATTATCGGCAGATAAATATGCAAGTAGGAATCATGAATCTTCTTTGTCTATTAGACAGGCTTATGACAGGCATGGGCGCAGCCCTGGTCATTCTGAGCGATCCCCACGTGACCGAGGCAGGTATTATGATCATAGGGATCGAACTCCAGTACGCAGGTCTCCTTGTGGTCGTGACAGATCTCCATATAACCGGGAGAAGTCCCCACATGGACGGGAGAGGTCCCCATATCCGTATAACAGGGAGAAATCCCCCCATGGTCGGGAGAGGTCGCCATATACAAGGAACTGGGACAGAAGTCGTCAGCCTGATCATAAATTGAGAAGTCCGACACGTTCTGAGCAGTCACCACCCGATCGAAGTCGGCGACACGATCCTAAGGATAGTACCGCAAATTTGTTAGAAGCATCTACCCTTGATCAGGCTAAGAAAGACAGTAGACGTGATTCAAGTTGTAAAACCTTACCAAGTGAAAAACATGATTCCCAAAATTCTTGTAAGGATCAAGAGGATAATCAGACTCAGAGGGATTCAAACTGTTCAAGTACCGAATCTCAGAATGAAAAAAGTGTGCAAGAGGCCATCAAGTCTGTTGAGAAAGACATCTGCAATCAACCTTTAAACGAACACCAGAGTTGCAGTCCAACCGTTACCCACAAAGAGTCTCCTCTCTCCGAGCCACCTCCTGAGGAGATGCCTTCTATGGAAGAGGATATGGACATTTGTGATACCCCTCCACATGTCCCTGTGGTGACAGATTTGTCTTCAGGGAAATGGTATTACTTGGACTATGGTGGTGTGGAAAATGGGCCTGCTAAATTGTGCGACATCAAGGTCCTTGTGGAGGAAGGTGTACTAATGTCAGATCACTTTATCAAGCACATAGATAGTGACAGGTGGTTAACAGTTGAAAATGCCGCGTCACCTTTGGCACCTCAGAACTTTCCTTCAATTGTGTCGGATAGCATAACTCAACTGGTAAATCCCCCAGAAGCTCCTGGTAATATCTTGTCAGATACAGCTGATATTTTTCAATCTGCTCATGAGAATCACCAGGAAATGCTAACCCCCTCACCGCCTCCACTAGTGTGCCCCATTGACAGTTTGCGTTCATCTGAACTTTTGGAGGACTTCCACATTGATGAAAGAGTTAAAAATCTCTTGGAGGGTTATGATGTCACTCCTGAGATGGAACCTGAGGCAATAAAAGAAGTGTTGCTAATGAATTTTGAAAATGCAAGAGGGGAGGGATCGAGAGATTATGAAGGTATGCTATCTTATGTTAGCAATTCACTTGGTTGGTTCATAGAACAAAATTTTTGTGGGGATTCCATTCAGTCGGTTATGATGGCTGGGTATACTTTCATTCAAAACAAAATTTGTTTTCCTTGGAATGTTTCTTGCCTTGGGGAAGATTATGATTCTAGTACTGATTTAGCATCTAGAGATTCTGAGTCTCAGTTAAGTATGTCATCTGATAAGGATAATGGACTAGGCTTTGGTATATCTAGTGACTGGTTTTCCACCCGTTGGTCATGTAAGGGTGGTGACTGGAAGAGGAATGATGATTCCCTGGATAGATATTCTAGAAAGAAACTTGTCCTAAATAATGGTTTTTCGTTATGTCAAATGCCAAAGTCTGGATGTGAAGATCCTCGTTGGCCTCAAAAAGATGAACTGTATTTTCCTTCTCAAAACAAGAGGCTTGATCTTCCTCTGTGGGCTTTCTGTGCTGATGAGCGGGATGAATGCAGTGCTGCAGGTAGATCAGTTCAAAGTAAGCCTGTTTCTGTGAGAGGAGTGAAAGGCAATGTTCTTTCAGTGGTCAGGATAAATGCATGTGTAGTAAAGGACCAGGGGTCATTGGTCTCTGAGTCACGCCACAAGACGCGGGGCAAGGAAAGACATCATTCTAGGTCAAGTCGGCCCTTCTCTGCAACCAGTGATAGCAAGAGATCATCAACTGAACATGATTCCCAGTTAAAAGCTTTTAGTGATCAAGGTTCTTACAGGATCATGGAATTCCTTAACACTCCCAAAGACCATCTCTGTACTGTCCATGAGTTGCAATTACATTTGGGTGACTGGTATTATTATGATGGTTCTGGGCGTGAAAGGGGCCCCTCATCATTTTCAGAGCTACAGTATTTAGTAGATCAAGGTATCATAAAAAGGCATAGCAGTGTGTTCAGGAAAAGTGACAAACTCTGGGTTCCTATCACCTCTGGAACAGAAACATCTGATGGCAGTCTCACGATCCAACAAGAAAGCAGTTCAATATCTGTTTTTTCATCAAAGCAAACTCAGGCATGTGGTGAACCTTACACAAATTCAAGTTTGTTTAACAGCTTGCATCCTCAGTTTGTTGGTTATACTCGTGGGAAGCTACATGAACTTGTGATGAAATCATATAAGAGCCGAGAGTTTGCTGCAGCTATAAATGAGGTTTTAGATCCCTGGATCAATGCAAGACAACCAAAGAAAGAAATTGAAAAACAACTATATTGGAAATCAGGTGATGCACATGCAACCAAGAGGGCCCGGTTACTTGTTGATGATAGTGAAGATGACAGTGATTTGGAAGATGGTGATTTTACTATCGAGAAGGATGAATCTAGTTTTGAGGATCTATGTGGTGATGCTACTTTTCCTGAAGATGAAATTGGTGTTACTGATTCTCAAATGGGAAGCTGGGGTAATTTGGATGGCCGTGTGCTAGCACAGATTTTCCATTTTTTGAAATCTGATTTGAAGTCCCTTGTTTTTGCTTCATTGACTTGCAAGCGCTGGAGAGCTTCTGTAAGGTTTTATAAGGAAGTGTCAATGCAGGTCAATTTGTCATCCTTGGGTCATTCCTGCACTGACGCCATGTTGTGGAACATTTTGGTAGGTTTGATATGTACTTGCCAATTCACTTTAACAGGAATGTCTCATTCTTTATCTTCCTCTAATCTGATTATTCGTTTGCAGAATGGATACGAGAAAGAGAAGATCAATTCTATAATTCTAAGGGGTTGTGTTAATATTACAGCTGAGATGCTTGAGAAAGTTCTTCTTTCATTTCCTGGCTTATTTACAGTAGACATTAGAGGGTGCAACCAGTTTGGAGAGCTGACTCTTAAATTTGCAAATGTGAAATGGATCAAGAGCCGGAGTTCATACTTGACTAAAATTTCCGAGGATCCTCACAAAATTAGAAGTCTTAAACACATTACAGAGCTAGCCTCATCTGTTTCCAAATCCAGCAGTATAGGTATAGATGATTTTGGGCAATTGAAGGACTATTTTGATAGTGTGGATAAGAGAGATACCAAGCAATTGTTCCGTCAAAACTTGTACAAGCGATCAAAACTATATGATGCTAGAAAGTCCTCCTCCATTCTATCGAGGGATGCTCGAACAAGACGTTGGGCAATCAAGAAAACTGAAAGTGGTTATAAGAGGATGGAGGAATTCCTTGCTTCAAGACTCCGTGAAATTATGAAGACAAACTCTTGTGACTTTTTTGTGCCCAAGGTTGCAGAAATTGAGGCTAAAATGAAGAGTGGTTATTATAGTAGCCGTGGGTTGAATTCTGTGAAAGAGGACATAAGTAGAATGTGTCGAGATGCCATAAAAGTGAAGAATCGGGGTGATGCTAGTTACATGAATCATATTATCACCCTGTTTATTCAGCTTGCAACACGGCTGGAAGAGAGTTCTAAATCTGTGCATGAGAGAAATCTACTGAAATCGTGGGACAATGACTTGCCTGCAGTGTCCTGCTCTACTTTGTCAAAGTATAAGAAGAATAGGTTAGTGAATGAAAGGAAGTATAGGAGTAATGGGACACATGGTTTGGATAATGTGGAATATACCTCTGATCGAGAAATTAAGAGGCGATTATCAAAGTTGAACAAAAAATCGATGGACTCAGAGAGTGAAACATCTGATGATGATCTAGATATGTCTTATGAAGATGGAAAGAGTGACAGTGATAGTACAACCTCTGACACTGAAAGTGAACGAGAAGTACATTCAGAAAGTCTGATTAGGGAGTCAAGAGGGGAAGGATACTTGACATCTGAGGAAGAGTTGGATTTTATAACTGATGATCGAGAGTGGGGTGCACGCATGACAAAAGCAAGTTTGGTTCCTCCAGTTACCAGGAAATATAAAGTCATTGATCAATATTGCATTGTAGCCGACGAAGAGGATGTGCGAAGGAAGATGAGGGTTTCATTACCAGACGACTATACTGAGAAGCTGAGTGCACAAAAGAATGGCACTGAGGAGTCAGATATGGAACTTCCTGAAGTGAAAGATTACAAACCTAGAAAGCAGCTAGGATATGAGGTTATCGAGCAAGAAGTTTATGGAATTGATCCTTTTACACACAATCTTTTGCTTGATTCTATGCCAGAGGAGTTAGACTGGGCTCTGCCAGAGAAGCATTTGTTTATAGAAGATACACTCCTTCGAACATTGAATAAGCAAGGTAGAAATTTTACTGGAACTGGAAGCACTCCAATGAGCTACCCATTGCGGCCTGTTGTTGAAGATATCAAAAGACAAGCCGAGGAGGATTGTGACGCAAGAATGGTTAAAATGTGTCAAGGTATTCTGAAGGCCATGGACAGTCGTCCAGAAGACAAATACGTAGCTTATAGAAAGGGGCTTGGTGTTGTTTGCAACAAGGAAGAAGGATTTGCGGAAGATGATTTTGTTGTGGAGTTTCTGGGAGAGGTTTATCCTGTGTGGAAGTGGTTTGAAAAACAAGATGGGATTCGATCTCTGCAGAAAGATAGTAAAGATCCAGCACCAGAATTCTACAACATCTACCTTGAGAGGCCAAAGGGTGATGCTGATGGGTATGACTTAGTTGTTGTTGATGCCATGCATATGGCTAATTATGCCAGTCGAATATGTCATTCGTGCAGACCTAACTGTGAAGCCAAGGTTACTGCCGTTGATGGTCAATATCAAATTGGTATTTATAGTGTTCGTAAAATTCAACATGGTGAGGAGATCACTTTTGACTACAATTCTGTAACGGAGAGCAAGGAGGAGTATGAAGCATCGGTTTGTTTGTGTGGAAGCCAAGTATGCCGTGGGAGCTATCTGAATTTGACTGGTGAAGGGGCTTTCCAAAAGGTTCTGAAGGACTCTCATGGAATTCTTGATCGGCATTATTTGATGCTAGAAGCTTGTGAATTAAATTCTGTGTCTGAAGAGGACTATAATGACCTTGGAAGAGCTGGTTTAGGCAGTTGTTTGCTTGGAGGCCTGCCAGATTGGCTTGTTGCTTATGCGGCTCGCCTTGTGAGATTTATCAATTTTGAACGAACAAAACTTCCTGAAGAAATTCTAAAGCATAATCTGGAAGAAAAAAGAAAATATTTTTCAGATATATGTCTTGAAGTTGAAAGGAGTGATGCCGAAGTTCAGGCTGAAGGTGTTTACAACCAAAGGCTTCAGAATCTTGCTGTCACTCTTGATAAGGTAAGGTATGTCATGAGATGTATTTTTGGCGATCCACGGAAAGCACCACCTCCTCTTGAGAAGCTCAGTCCTGAAGCAACTGTTTCCTTCCTCTGGAAAGGTGAGGGTTCATTTGTTGAGGAGCTTCTTAAGTGCATCGCTCCTCATATTGAAGAAGAGATCTTGAAGGATCTCAAGCTTAAAATTCATGCTCACGATCCTTCACATTCAGTAGATATTCAGAAAGAGCTTCGGAAATCTTTGTTATGGCTTAGGGACGAAATCCGAAATCTTCCTTGTACATATAAATGTCGGCATGATGCTGCTGCTGACTTAATCCATATTTATGCTTATACCAAGTACTTCTTTAGGATACAGAATTATCAAGCGATTACATCACCACCTGTCTATATTAGTCCACTTGACTTAGGTCCCAAGTACACTAACAAGTCGGGAGCAGAATTTCAGGAGTACCGAAAGATATACGGTGAAAATTATTGTTTAGGACAGCTGATATTTTGGCATAACCAGAGTAATGCTGATCCAGATCGGAGCCTGGCTAGAGCTAGCAGGGGTTGCTTGTCTTTACCAGATACCAGTTCCTTTTATGCCAAGGCGCAGAAGCCCTCTCGACATTGTGTTTATGGTCCAAGGACCGTGAGATCTATGCTTGCTAGAATGGAGAAGCAGCCGCAGAGATCTTGGCCCAAAGACCGGATATGGTCATTCAAAAGTTCTCCGAAATTCTTTGGTAGCCCGATGTTAGATGCTGTAGTAAATAACTCTGCACTGGACAGGGAGATGGTTCATTGGTTGAAGCACAGACCTGCCATATTCCAAGCCATGTGGGACCGTTAA 7356 0.4282 MGDGGVPCMPLQYIMERLPSSEKTVVCGGKSGNGFNSKLFKFAGNERRKMKARKSELGLDRVNKRSTNDVENGGEVEKQQEKVQKEEVEEGELGTLKWPRTDLENGEFVPEMPPPAQPRKGEIENGEIVSEKWKGRELEKGEIASGKWRKEDVERGEIVPEKGGRKGEAERGEYGSWRGVNDEIEKGEFIPDRWYKGDYDSRIRRYHSGRDKGWKIERERESTPSSGRYSGDDFFRKKDLNIRGSQHPKSSPRWEGGQQRNVRISSKIVDDEKNVHSNGKDHARDYTSGSRLKRLGNDTDSYERKHSADYAGLKSRRLSDDSCRQVYSENYSRRSVERSYRTNNATKLSADKYASRNHESSLSIRQAYDRHGRSPGHSERSPRDRGRYYDHRDRTPVRRSPCGRDRSPYNREKSPHGRERSPYPYNREKSPHGRERSPYTRNWDRSRQPDHKLRSPTRSEQSPPDRSRRHDPKDSTANLLEASTLDQAKKDSRRDSSCKTLPSEKHDSQNSCKDQEDNQTQRDSNCSSTESQNEKSVQEAIKSVEKDICNQPLNEHQSCSPTVTHKESPLSEPPPEEMPSMEEDMDICDTPPHVPVVTDLSSGKWYYLDYGGVENGPAKLCDIKVLVEEGVLMSDHFIKHIDSDRWLTVENAASPLAPQNFPSIVSDSITQLVNPPEAPGNILSDTADIFQSAHENHQEMLTPSPPPLVCPIDSLRSSELLEDFHIDERVKNLLEGYDVTPEMEPEAIKEVLLMNFENARGEGSRDYEGMLSYVSNSLGWFIEQNFCGDSIQSVMMAGYTFIQNKICFPWNVSCLGEDYDSSTDLASRDSESQLSMSSDKDNGLGFGISSDWFSTRWSCKGGDWKRNDDSLDRYSRKKLVLNNGFSLCQMPKSGCEDPRWPQKDELYFPSQNKRLDLPLWAFCADERDECSAAGRSVQSKPVSVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRGKERHHSRSSRPFSATSDSKRSSTEHDSQLKAFSDQGSYRIMEFLNTPKDHLCTVHELQLHLGDWYYYDGSGRERGPSSFSELQYLVDQGIIKRHSSVFRKSDKLWVPITSGTETSDGSLTIQQESSSISVFSSKQTQACGEPYTNSSLFNSLHPQFVGYTRGKLHELVMKSYKSREFAAAINEVLDPWINARQPKKEIEKQLYWKSGDAHATKRARLLVDDSEDDSDLEDGDFTIEKDESSFEDLCGDATFPEDEIGVTDSQMGSWGNLDGRVLAQIFHFLKSDLKSLVFASLTCKRWRASVRFYKEVSMQVNLSSLGHSCTDAMLWNILVGLICTCQFTLTGMSHSLSSSNLIIRLQNGYEKEKINSIILRGCVNITAEMLEKVLLSFPGLFTVDIRGCNQFGELTLKFANVKWIKSRSSYLTKISEDPHKIRSLKHITELASSVSKSSSIGIDDFGQLKDYFDSVDKRDTKQLFRQNLYKRSKLYDARKSSSILSRDARTRRWAIKKTESGYKRMEEFLASRLREIMKTNSCDFFVPKVAEIEAKMKSGYYSSRGLNSVKEDISRMCRDAIKVKNRGDASYMNHIITLFIQLATRLEESSKSVHERNLLKSWDNDLPAVSCSTLSKYKKNRLVNERKYRSNGTHGLDNVEYTSDREIKRRLSKLNKKSMDSESETSDDDLDMSYEDGKSDSDSTTSDTESEREVHSESLIRESRGEGYLTSEEELDFITDDREWGARMTKASLVPPVTRKYKVIDQYCIVADEEDVRRKMRVSLPDDYTEKLSAQKNGTEESDMELPEVKDYKPRKQLGYEVIEQEVYGIDPFTHNLLLDSMPEELDWALPEKHLFIEDTLLRTLNKQGRNFTGTGSTPMSYPLRPVVEDIKRQAEEDCDARMVKMCQGILKAMDSRPEDKYVAYRKGLGVVCNKEEGFAEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKDSKDPAPEFYNIYLERPKGDADGYDLVVVDAMHMANYASRICHSCRPNCEAKVTAVDGQYQIGIYSVRKIQHGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKDSHGILDRHYLMLEACELNSVSEEDYNDLGRAGLGSCLLGGLPDWLVAYAARLVRFINFERTKLPEEILKHNLEEKRKYFSDICLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPRKAPPPLEKLSPEATVSFLWKGEGSFVEELLKCIAPHIEEEILKDLKLKIHAHDPSHSVDIQKELRKSLLWLRDEIRNLPCTYKCRHDAAADLIHIYAYTKYFFRIQNYQAITSPPVYISPLDLGPKYTNKSGAEFQEYRKIYGENYCLGQLIFWHNQSNADPDRSLARASRGCLSLPDTSSFYAKAQKPSRHCVYGPRTVRSMLARMEKQPQRSWPKDRIWSFKSSPKFFGSPMLDAVVNNSALDREMVHWLKHRPAIFQAMWDR 2451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 521 538 - -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 147 172 - -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 265 323 - -
Vimu4g00936 2451 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 427 1310 - -
Vimu4g00936 2451 ProSiteProfiles SET domain profile. 1886 2021 IPR001214 GO:0005515
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 324 362 - -
Vimu4g00936 2451 SUPERFAMILY F-box domain 1238 1280 IPR036047 GO:0005515
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 210 540 - -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 1666 1696 - -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 970 1007 - -
Vimu4g00936 2451 Gene3D Ribonuclease Inhibitor 1238 1441 IPR032675 -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 552 567 - -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 363 476 - -
Vimu4g00936 2451 Gene3D SET domain 1864 2052 IPR046341 -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 486 520 - -
Vimu4g00936 2451 Pfam Protein SET DOMAIN GROUP 2 C-terminal 2032 2451 IPR045606 -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 210 244 - -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 1642 1696 - -
Vimu4g00936 2451 Pfam SET domain 1963 2021 IPR001214 GO:0005515
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 245 264 - -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 51 131 - -
Vimu4g00936 2451 CDD SET_SETD2-like 1895 2043 - -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 51 97 - -
Vimu4g00936 2451 SMART set_7 1887 2027 IPR001214 GO:0005515
Vimu4g00936 2451 SUPERFAMILY SET domain 1896 2044 IPR046341 -
Vimu4g00936 2451 MobiDBLite consensus disorder prediction 552 580 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu4g00936 SET 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00936 K22748 - gmx:100776205 4133.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00936 4 7686839 7701747 Vimu4g00936 4 7686839 7701747 ECH