Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu4g00935 | ATGTATTCCGGCGACGGCTCCTCCTTGGACCCCATGTTTTCCGGCACCAGTCTACAGTCACTCCTCTCTCTCAACCCTTCCCTTTTCGCGGATGGCTTCCCCACCTTGGCTTCCCTAACCGACGACCCAACCCTAATCCCGCAACCCGCAGAGCCTCCAAAAGTCCTTGTCCCTAAAACCGAACCCTCTCAACCCTTCAAATTCTTCCCCCAATACCATCCTTCCCCCTTTCTCCGCCTCCCGCAGCTCCGCTCCGCAGAGCAGCCCCAGCCGAAACGGCAGCGTTTGGAGTCCCCGGTGATCCCTCAGAGCAACCTGGCTCGGCAACGCAGACAGAAGCTGAGCGAGAAAACCCGGTGCCTGCAGAAACTGATGCCTTGGGACAAGAAAATGGACCAAGGCACGCTCCTGGAGGAAGCGTACAAGTACGTAAGGTTTCTTCAGGCGCAGTTCCGCGTGCTACAGTCGATGCCCTCCCATTCATCTTCTTCCTCGCCTTCCTTCCGCCAAAACTCAGCAGTATTCGTGGATCTGGAGAAACTGAATCGCTCCCAGCTACTGCAGACCATGCTATATTCTCAAGGTTTTTGTGTCTTCTCTTTGGAACAGTTGTCTCTCCTCAGAAAATTATCAGATAGGAGGCACCACCACCATAACCACGTTTCCTCCAAATCTGGAGCATGGAAAGAGCATAGAAGAGCGCAACAATGGAAAAAGACGAAAAAGAAAGCAGAAGACCCACACACAGTCACTGCTGAAGCAGATGAACAAATACTGGGAGAAGAACTTGACACAGACAAAGCCCCACTATCTTCGACATTTACGAAATCGTTTTCCAAGCTGCAGAGAAAAAAGAACAAGACAATGTGCTACGTGGGGAAAGCAACAAAGATCTTCATTTTCATAGTCACGGTGCTCGTTGTTCTGGGTCTGGTTTTGGGATTGGGGATCCTACGCCGCCGGCACCACACAACTGCAAATGAATGTTCTGATGGGTCTTGCCCACGTCTACCTCCACCTGCATTCTCCGCCCCCAATTTCAATCCACCAACCCCACCTCCCTCCTTTCAATACCCCCCTAACCCACCAACCATTCCGGTTACAAATCCAACCCCTCCTCCTCCTTCCGACACCAACCCATCTTCGCCGCCGCCGCCGCCAATGCAGCAGTCGCCGCCACCGCCGCCACCGCCGCCGGAGGAAACTCCCCCTCCAGATCCTCCAAGTGTGGCGGGGCCACCTATTAATACACCTACACCAGGGTCGGCGCTGGTGGCACAAGCTCCTGTGCATGTTTTTGTATCCAAGCCACAAGGCCTCGTGCTGGGGTTGGCTGCAGCAGTGCTTTTGGCATTTGCTCATGTTATAGCGAATTTGGTTGGTGGCTTCAGTTGCCTTTGTTCTCAACCAGAGGCTGATAAGGCTTCTCCCAATAGACAATTCTCAATGGCTTCTCTCATTTTAACATGGTAA | 1473 | 0.5302 | MYSGDGSSLDPMFSGTSLQSLLSLNPSLFADGFPTLASLTDDPTLIPQPAEPPKVLVPKTEPSQPFKFFPQYHPSPFLRLPQLRSAEQPQPKRQRLESPVIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQGTLLEEAYKYVRFLQAQFRVLQSMPSHSSSSSPSFRQNSAVFVDLEKLNRSQLLQTMLYSQGFCVFSLEQLSLLRKLSDRRHHHHNHVSSKSGAWKEHRRAQQWKKTKKKAEDPHTVTAEADEQILGEELDTDKAPLSSTFTKSFSKLQRKKNKTMCYVGKATKIFIFIVTVLVVLGLVLGLGILRRRHHTTANECSDGSCPRLPPPAFSAPNFNPPTPPPSFQYPPNPPTIPVTNPTPPPPSDTNPSSPPPPPMQQSPPPPPPPPEETPPPDPPSVAGPPINTPTPGSALVAQAPVHVFVSKPQGLVLGLAAAVLLAFAHVIANLVGGFSCLCSQPEADKASPNRQFSMASLILTW | 490 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu4g00935 | 490 | SMART | finulus | 104 | 153 | IPR011598 | GO:0046983 | |
Vimu4g00935 | 490 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 89 | 209 | IPR045843 | GO:0003700|GO:0006355 | |
Vimu4g00935 | 490 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 104 | 157 | IPR036638 | GO:0046983 | |
Vimu4g00935 | 490 | MobiDBLite | consensus disorder prediction | 338 | 415 | - | - | |
Vimu4g00935 | 490 | Gene3D | - | 102 | 165 | IPR036638 | GO:0046983 | |
Vimu4g00935 | 490 | MobiDBLite | consensus disorder prediction | 325 | 422 | - | - | |
Vimu4g00935 | 490 | MobiDBLite | consensus disorder prediction | 86 | 112 | - | - | |
Vimu4g00935 | 490 | PRINTS | Histamine H3 receptor signature | 468 | 490 | IPR003980 | GO:0001505|GO:0004969|GO:0007186|GO:0016020 | |
Vimu4g00935 | 490 | PRINTS | Histamine H3 receptor signature | 382 | 397 | IPR003980 | GO:0001505|GO:0004969|GO:0007186|GO:0016020 | |
Vimu4g00935 | 490 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 98 | 147 | IPR011598 | GO:0046983 | |
Vimu4g00935 | 490 | Pfam | Protein of unknown function (DUF1218) | 446 | 490 | IPR009606 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu4g00935 | Vimu-Chr4 | 7676378 | 7683920 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu4g00935 | 76 | 211 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G22100 | 33.333 | 9.13e-18 | 81.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vimu4g00935 | DUF1218 | 1.7e-05 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu4g00935 | - | - | aprc:113855910 | 263.848 |