Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00935 ATGTATTCCGGCGACGGCTCCTCCTTGGACCCCATGTTTTCCGGCACCAGTCTACAGTCACTCCTCTCTCTCAACCCTTCCCTTTTCGCGGATGGCTTCCCCACCTTGGCTTCCCTAACCGACGACCCAACCCTAATCCCGCAACCCGCAGAGCCTCCAAAAGTCCTTGTCCCTAAAACCGAACCCTCTCAACCCTTCAAATTCTTCCCCCAATACCATCCTTCCCCCTTTCTCCGCCTCCCGCAGCTCCGCTCCGCAGAGCAGCCCCAGCCGAAACGGCAGCGTTTGGAGTCCCCGGTGATCCCTCAGAGCAACCTGGCTCGGCAACGCAGACAGAAGCTGAGCGAGAAAACCCGGTGCCTGCAGAAACTGATGCCTTGGGACAAGAAAATGGACCAAGGCACGCTCCTGGAGGAAGCGTACAAGTACGTAAGGTTTCTTCAGGCGCAGTTCCGCGTGCTACAGTCGATGCCCTCCCATTCATCTTCTTCCTCGCCTTCCTTCCGCCAAAACTCAGCAGTATTCGTGGATCTGGAGAAACTGAATCGCTCCCAGCTACTGCAGACCATGCTATATTCTCAAGGTTTTTGTGTCTTCTCTTTGGAACAGTTGTCTCTCCTCAGAAAATTATCAGATAGGAGGCACCACCACCATAACCACGTTTCCTCCAAATCTGGAGCATGGAAAGAGCATAGAAGAGCGCAACAATGGAAAAAGACGAAAAAGAAAGCAGAAGACCCACACACAGTCACTGCTGAAGCAGATGAACAAATACTGGGAGAAGAACTTGACACAGACAAAGCCCCACTATCTTCGACATTTACGAAATCGTTTTCCAAGCTGCAGAGAAAAAAGAACAAGACAATGTGCTACGTGGGGAAAGCAACAAAGATCTTCATTTTCATAGTCACGGTGCTCGTTGTTCTGGGTCTGGTTTTGGGATTGGGGATCCTACGCCGCCGGCACCACACAACTGCAAATGAATGTTCTGATGGGTCTTGCCCACGTCTACCTCCACCTGCATTCTCCGCCCCCAATTTCAATCCACCAACCCCACCTCCCTCCTTTCAATACCCCCCTAACCCACCAACCATTCCGGTTACAAATCCAACCCCTCCTCCTCCTTCCGACACCAACCCATCTTCGCCGCCGCCGCCGCCAATGCAGCAGTCGCCGCCACCGCCGCCACCGCCGCCGGAGGAAACTCCCCCTCCAGATCCTCCAAGTGTGGCGGGGCCACCTATTAATACACCTACACCAGGGTCGGCGCTGGTGGCACAAGCTCCTGTGCATGTTTTTGTATCCAAGCCACAAGGCCTCGTGCTGGGGTTGGCTGCAGCAGTGCTTTTGGCATTTGCTCATGTTATAGCGAATTTGGTTGGTGGCTTCAGTTGCCTTTGTTCTCAACCAGAGGCTGATAAGGCTTCTCCCAATAGACAATTCTCAATGGCTTCTCTCATTTTAACATGGTAA 1473 0.5302 MYSGDGSSLDPMFSGTSLQSLLSLNPSLFADGFPTLASLTDDPTLIPQPAEPPKVLVPKTEPSQPFKFFPQYHPSPFLRLPQLRSAEQPQPKRQRLESPVIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQGTLLEEAYKYVRFLQAQFRVLQSMPSHSSSSSPSFRQNSAVFVDLEKLNRSQLLQTMLYSQGFCVFSLEQLSLLRKLSDRRHHHHNHVSSKSGAWKEHRRAQQWKKTKKKAEDPHTVTAEADEQILGEELDTDKAPLSSTFTKSFSKLQRKKNKTMCYVGKATKIFIFIVTVLVVLGLVLGLGILRRRHHTTANECSDGSCPRLPPPAFSAPNFNPPTPPPSFQYPPNPPTIPVTNPTPPPPSDTNPSSPPPPPMQQSPPPPPPPPEETPPPDPPSVAGPPINTPTPGSALVAQAPVHVFVSKPQGLVLGLAAAVLLAFAHVIANLVGGFSCLCSQPEADKASPNRQFSMASLILTW 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00935 490 SMART finulus 104 153 IPR011598 GO:0046983
Vimu4g00935 490 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 89 209 IPR045843 GO:0003700|GO:0006355
Vimu4g00935 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 157 IPR036638 GO:0046983
Vimu4g00935 490 MobiDBLite consensus disorder prediction 338 415 - -
Vimu4g00935 490 Gene3D - 102 165 IPR036638 GO:0046983
Vimu4g00935 490 MobiDBLite consensus disorder prediction 325 422 - -
Vimu4g00935 490 MobiDBLite consensus disorder prediction 86 112 - -
Vimu4g00935 490 PRINTS Histamine H3 receptor signature 468 490 IPR003980 GO:0001505|GO:0004969|GO:0007186|GO:0016020
Vimu4g00935 490 PRINTS Histamine H3 receptor signature 382 397 IPR003980 GO:0001505|GO:0004969|GO:0007186|GO:0016020
Vimu4g00935 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
Vimu4g00935 490 Pfam Protein of unknown function (DUF1218) 446 490 IPR009606 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00935 Vimu-Chr4 7676378 7683920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00935 76 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 33.333 9.13e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g00935 DUF1218 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00935 - - aprc:113855910 263.848