Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00925 ATGGACATGAATTCCTCAAGTGGTGCCTCCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCCGCTGCTGACTTCATGGTTGCAGCAGACTCTGGAGGTTTTAGTTGGGGGCCTCAAAATCACACCTTGAAGGGTCCTTCACATACGAGGTTAAAGACCGAGTCGTGTGCATCTGGCGCCAAGGCGTGTCGCGAAAAAATGCGAAGGGATAAACTGAATGATAGGCATGCTATTACCTTGCGTCTTATGCCGCCCAAAACAGACAAAGTTGCAATATTAAGTGATGCTGCTCGAGTGGTAGTCCAATTGAGAAATGAAACCGAGAGGCTTAAGGAAATGAATGATGAACTACAGGGAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATATGCTGAAGGAAGAGAAAGAAAAGTTGGAGCAGCAGGTAAAACTGACAAATATACAGAACAGCTTCCTCCCTCAAGGCCCAGCTGCTAAAGGACAAGTTGGTACCCATAAGCTGATACCTTTCATTGGCTATCCTGGAATTGCTATGTGGCAGTTTATGCCCCCTGCTGCAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 630 0.454 MDMNSSSGASGWLYDYGFDIPVAAADFMVAADSGGFSWGPQNHTLKGPSHTRLKTESCASGAKACREKMRRDKLNDRHAITLRLMPPKTDKVAILSDAARVVVQLRNETERLKEMNDELQGKVKELKAEKNELRDEKNMLKEEKEKLEQQVKLTNIQNSFLPQGPAAKGQVGTHKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00925 209 Gene3D - 62 131 IPR036638 GO:0046983
Vimu4g00925 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 133 IPR036638 GO:0046983
Vimu4g00925 209 PANTHER BHLH TRANSCRIPTION FACTOR 44 209 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vimu4g00925 209 Coils Coil 95 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00925 Vimu-Chr4 7625152 7626925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00925 17 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 52.885 1.06e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00925 - - gmx:100806838 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00925 4 7625152 7626925 Vimu4g00925 4 7625152 7626925 ECH