Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00919 ATGTGCAAAGGTACAGCAGACTGTACTAGGCTCCTACGTAAAGAGAGAGAAACATGTTGTGAGCTGTGTGGATTAGAGGCTTGTTTGTATTGTGAAGCTGATGATGCATACTTGTGTAGAAGATGTGATAGAAGGGTTCATGGAGCTAATTTTTTGGCCTTTAGGCATATAAGATGTTTTCTCTGCAACTCATGTCGTAACCTTTCGCGAAGATATCTCATTGGAGAATCACTAGAAGTTGTTCTTCCTGACAACACAGGAACCTATAGAAAGTGTTCAAGACTGCATACCAACCCTTTCCTATTCTTCTAA 312 0.4038 MCKGTADCTRLLRKERETCCELCGLEACLYCEADDAYLCRRCDRRVHGANFLAFRHIRCFLCNSCRNLSRRYLIGESLEVVLPDNTGTYRKCSRLHTNPFLFF 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00919 103 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 19 68 - -
Vimu4g00919 103 SMART bboxneu5 15 61 IPR000315 GO:0008270
Vimu4g00919 103 CDD Bbox1_BBX-like 19 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00919 Vimu-Chr4 7574954 7575265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00919 20 103 C2C2-CO-like Transcription Factor Family AT3G21890 50.549 6.91e-24 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00919 - - pvu:PHAVU_005G113200g 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00919 4 7574954 7575265 Vimu4g00919 4 7574954 7575265 ECH
Vimu4g00919 4 7574954 7575265 Vimu5g01566 5 27131941 27133099 PCT