Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00918 ATGATATCTTTTACCAGCTGCGTCTGGAGGGGAGCTACAGCAATTTTGGTCTGGGGCATGGAACCTCTGTGTGAGTTTTGTTGGGCTGTGATAGCTGTGGTTTACTGCAAGTCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTGCACTCTGCGAATTCTCTGTCTCGCAGGCATTCGCGTTCTCTCCTTTGTGATAAGTGCTATTCCCAGCCAGCAGTGATACGATGCATGGATCATAAGTTGTCCTCGTGCCAAAGTTGTGATTGGAACCCGACTGCTTGTTTTGCAGCGGGACATAGGCGCCTCACGTTGAATTGTTACAATGGTTGTCCTTCTTTGTCTGAGTTTTCTAGGATGTGGTCCTTTGTGTTTGATGATAGTTCCTCACAAGCTGGCTGGGAATCTGTTAGCACTTTTCCAAAAAGTGATAGCACTAGCCTGGAGCAACCTGATCACAATGGTGGTTCCTTTAGTTTGGTGATTGAGAAGTTGGATGAAATTGAATCTTGTGTCAGATATGAACCTTGGATGGGGCAACCTCACATCATTCCTTCAAATCCAAATTACACACCGTACAGCAAGGAAGAAGGATTTTTCCTAGCTCAGGACTCAAACCAGCCAAAGGAGTGTACTGATCGAGGAACTGGTGATGGGAATGGACTCTCTGAAGGTCTCAATGTGGACAGAGCTCCAATAAATTTTGAAAGTGCTGAAGAAATATTTGGCTGTTCACAAGCTGCCACTAGATACCCTCTTGAAGATGGAGGAGTGGACTGTCTATTGATGGATAAAAAATTATCAGTCACAGAATCTAGTTCACTTATTGAGAGTGCCTTAGAGGCATCATCATCGATTCAACAAGATTGTGTGGCTTTTCAGTCATCTGGGAGACGTGGATCAGTTAGTATGTTGCAGGTTATGAACAGTAACACAAACTGTGCACTTATGAATCCTAGCAGCACTGGAAACATCAGTCTGGGATTTCCTCAGGGTCAAGTTCATTCAAGCATACCTCTTCAATTAGGCAATATTGTGAGTGAAAATAGTTCTACTGAATATCAAGACTGCGGGATATCGCCAATGTTTCTGCCGGGTGAAATCCCCTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAGGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCAGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGCGAAGCATATGATTATGACCCTCTTGTGACAAGGGAGGTCTAA 1323 0.4392 MISFTSCVWRGATAILVWGMEPLCEFCWAVIAVVYCKSDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCYSQPAVIRCMDHKLSSCQSCDWNPTACFAAGHRRLTLNCYNGCPSLSEFSRMWSFVFDDSSSQAGWESVSTFPKSDSTSLEQPDHNGGSFSLVIEKLDEIESCVRYEPWMGQPHIIPSNPNYTPYSKEEGFFLAQDSNQPKECTDRGTGDGNGLSEGLNVDRAPINFESAEEIFGCSQAATRYPLEDGGVDCLLMDKKLSVTESSSLIESALEASSSIQQDCVAFQSSGRRGSVSMLQVMNSNTNCALMNPSSTGNISLGFPQGQVHSSIPLQLGNIVSENSSTEYQDCGISPMFLPGEIPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTREV 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00918 440 Pfam CCT motif 384 426 IPR010402 GO:0005515
Vimu4g00918 440 MobiDBLite consensus disorder prediction 208 229 - -
Vimu4g00918 440 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 20 429 - -
Vimu4g00918 440 SMART bboxneu5 19 66 IPR000315 GO:0008270
Vimu4g00918 440 CDD Bbox1_BBX-like 23 66 - -
Vimu4g00918 440 ProSiteProfiles CCT domain profile. 384 426 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00918 Vimu-Chr4 7565298 7568656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00918 20 434 C2C2-CO-like Transcription Factor Family AT3G21880 43.810 4.54e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu4g00918 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00918 - - vra:106761521 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00918 4 7565298 7568656 Vimu4g00918 4 7565298 7568656 ECH