Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00909 ATGGAAATGTTAAAATTTATACAGATGTTTGTTACTGACACATTGGAGGTACTATTTGTGCAAACTAAAGCTGCTCTAACTTTCTGCTTTTGTTTCCCTTTTTCCTGCCCAAAAACATCAGGCTCCACAATGAGGGTTGCTATTGTCACAAGAGCAAACCAATTTTTCATTGAAATTGGTGTCCAAGAGACAGTTGTAGCAATCAAGAAGAAAATAGAGCAACTTCATGGGGTTCCAGTGGCTTCACAAGTCCTATCTGTTACTGGGTGGGAACTAGTTGATGGATTAGACATGGATGACTATCCAATAGTGACTGAAGGTACAAAAATTGACCTCACCATCAAACCAGCAGAGCCACACCCTAACAAAATGCAAATCACTGTGAAATTTTCAGCTAAAAAACTCAGCATTGAGGTGGACAGAACTGATACTGTTCGTAGCTTGAAGGAAAAAATTCACATCATTGATAGCACCCCCATCAAAAGAATGACACTTTACTTTTCTGGGACTGAACTGGATGAAGATTTTAGAACCTTGAGTGAATATGGCATACGTGAATTTTCTGAGATCGTGGTGTTCCTCAAGACCATGAATCGATCAAGAGATGAACCTCCCACAAGGAATTTAACCTTCGTTGTACAAACTTCTTCTAGCTTGCTTAATGAAGCCACCATTCCACTGGAGATGAGAGATACAAACACAGTGAACGAGTTGAAGCAGTTACTGATAAGCAGAAAGATTCTGCCTGGTGATGACTATTTGTTTATACACAGACAGAGGATCATGCGTGATAGTTGTAGCCTCAGGTGGCATGGAGTTGAAAATGGAGACTGTCTCTATGTGTTTAAGGGAACAGTTAGCACTGGTGGGTTTGCATGA 879 0.4039 MEMLKFIQMFVTDTLEVLFVQTKAALTFCFCFPFSCPKTSGSTMRVAIVTRANQFFIEIGVQETVVAIKKKIEQLHGVPVASQVLSVTGWELVDGLDMDDYPIVTEGTKIDLTIKPAEPHPNKMQITVKFSAKKLSIEVDRTDTVRSLKEKIHIIDSTPIKRMTLYFSGTELDEDFRTLSEYGIREFSEIVVFLKTMNRSRDEPPTRNLTFVVQTSSSLLNEATIPLEMRDTNTVNELKQLLISRKILPGDDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSTGGFA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00909 292 ProSiteProfiles Ubiquitin domain profile. 209 281 IPR000626 GO:0005515
Vimu4g00909 292 SUPERFAMILY Ubiquitin-like 35 119 IPR029071 -
Vimu4g00909 292 ProSiteProfiles Ubiquitin domain profile. 124 199 IPR000626 GO:0005515
Vimu4g00909 292 Gene3D - 123 195 - -
Vimu4g00909 292 SMART ubq_7 207 284 IPR000626 GO:0005515
Vimu4g00909 292 SMART ubq_7 124 195 IPR000626 GO:0005515
Vimu4g00909 292 SMART ubq_7 44 115 IPR000626 GO:0005515
Vimu4g00909 292 PANTHER UV EXCISION REPAIR PROTEIN RAD23 124 196 - -
Vimu4g00909 292 SUPERFAMILY Ubiquitin-like 118 203 IPR029071 -
Vimu4g00909 292 SUPERFAMILY Ubiquitin-like 219 284 IPR029071 -
Vimu4g00909 292 CDD Ubl_ubiquitin_like 126 193 - -
Vimu4g00909 292 ProSiteProfiles Ubiquitin domain profile. 44 103 IPR000626 GO:0005515
Vimu4g00909 292 CDD Ubl_ubiquitin_like 224 282 - -
Vimu4g00909 292 Gene3D - 196 287 - -
Vimu4g00909 292 Pfam Ubiquitin family 220 281 IPR000626 GO:0005515
Vimu4g00909 292 Pfam Ubiquitin family 126 196 IPR000626 GO:0005515
Vimu4g00909 292 Pfam Ubiquitin family 51 115 IPR000626 GO:0005515
Vimu4g00909 292 Gene3D - 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00909 Vimu-Chr4 7519081 7522598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00909 124 195 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.986 6.33e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00909 - - gmx:100781557 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00909 4 7519081 7522598 Vimu4g00909 4 7519081 7522598 ECH