Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00907 ATGGCTGACTCCAATACCTCTTCCACTCAAACTTCTCCACATTCTTCTGTGAAAGATGACAGAATATGTTTAGATTCAGGGAAGCGTGGATCTTCCAAGGTTGAATTTTCTGAAGATGAGGAAACTCTTATAATCAGGATGTATAAATTGGTTGGGAAAAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGATGAAATAGAGAAGTATTGGACTTCGAGACTCTCGAGTTCTAGAAGCTACAGCGATTCCAAAGATGGAAAGCCCTTTATCTTTCCAAGACAGAGAGATGGAGTCCATGGAACGAGTACGATGATGAGGGCAATGGCCAGGAGCAATATAATGGAAATCATCATGCATTTTCTTGATTTCTTTTGCAAACTTTTTGCAGTTTGGAGAGCGTCGTTACCCAGTCTCACATGA 432 0.412 MADSNTSSTQTSPHSSVKDDRICLDSGKRGSSKVEFSEDEETLIIRMYKLVGKRWSLIAGRIPGRTADEIEKYWTSRLSSSRSYSDSKDGKPFIFPRQRDGVHGTSTMMRAMARSNIMEIIMHFLDFFCKLFAVWRASLPSLT 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00907 143 MobiDBLite consensus disorder prediction 1 17 - -
Vimu4g00907 143 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Vimu4g00907 143 MobiDBLite consensus disorder prediction 1 34 - -
Vimu4g00907 143 Gene3D - 35 94 - -
Vimu4g00907 143 MobiDBLite consensus disorder prediction 18 34 - -
Vimu4g00907 143 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 29 83 - -
Vimu4g00907 143 MobiDBLite consensus disorder prediction 76 98 - -
Vimu4g00907 143 SMART sant 32 80 IPR001005 -
Vimu4g00907 143 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 82 IPR017930 -
Vimu4g00907 143 CDD SANT 35 74 IPR001005 -
Vimu4g00907 143 SUPERFAMILY Homeodomain-like 34 79 IPR009057 -
Vimu4g00907 143 FunFam MYB-like transcription factor 35 77 - -
Vimu4g00907 143 Pfam Myb-like DNA-binding domain 34 76 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00907 Vimu-Chr4 7497978 7503497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00907 28 88 MYB Transcription Factor Family AT5G14750 50.820 1.55e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu4g00907 Myb_DNA-binding 5.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00907 - - gmx:100801532 114.39