Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00900 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGATGATAGGAAGAAACGGCAGCGTTGGTGGCTTTGGATTATCTTCGGGGCTCTCTCTTGGCCAGATTGAAAACCATAAGGGTCCGGAATCTCAAAGATCTATAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGCCAACTTCTCCCTTTGGACATGCCCCAGAACACTTCAGAGAGCGATGTCCCAAGAATCCGCGAAGATGACTTTGACAGTGCCACCAAGTCAGGAAGTGAAAACCAAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCATCGCCACACTCAGCATCAGATCCAGGAAATGGAAGCGTTCTTTAAGGAGTGTCCACACCCTGATGACAAGCAAAGGAAAGAGCTGAGTAGAGAGTTAGGGTTAGAGCCTTTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGCACTCAGATAAAGACACAACATGAACGCCATGAGAACACACAGCTCCGAACTGAAAACGATAAGCTTCGAGCTGATAACATGAGGTTCAGGGAAGCTCTCGGCAATGCCTCCTGTCCCAACTGTGGAGGACCAACAGCTATAGGAGAAATGTCATTCGATGAACATCACTTGAGGCTTGAAAATGCTCGCCTCAGAGAAGAGATTGATAGGATTTCTGCAATTGCTGCAAAGTACGTGGGGAAGCCTGTGGTGAGTTATCCACTTCTTTCTCCTTCATCTGTTCCTCCTCGTCCACTTGAGCTTGGGATTGGAGGTGGTTTTGGTGGCCAGCCTGCGGGCATTGGTGGAGACATGTACGGTGGAGCTGCAGGAGATCTTCTTAGGTCAATCAGTGGACCTACTGAGGCTGATAAACCCATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAACTCATTGGAATGGCGCAAATGGGTGATCCTCTTTGGTTGGCTACTCTGGATGGCACAACCACTGTTCTCAATGAGGATGAATACATCAGGTCTTTTCCTAGAGGAATTGGTCCTAAACCAGCTGGTTTCAAGTGTGAAGCTTCCAGAGAAACTGCAGTTGTTATCATGAACCATGTTAGCCTTGTTGAGATTCTCATGGACGTGGTACTGTTCTCTGGCATTGTCTCAAGAGCAATGACTTTGGAGGTGTTATCAACTGGGGTGGCTGGAAACTACAACGGTGCATTGCAAGTGATGACAGCAGAATTACAAGTACCTTCACCTCTGGTTCCAACTCGAGAGAGCTATTTTGTAAGATATTGTAAGCAGCATGGTGATGGGACTTGGGCTGTAGTGGACGTATCCTTGGATAATTTGCGTCCTAGTCCCTCAGCCAGATGTAGAAGAAGACCTTCTGGCTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATTTGGGTTGAACATGTTGAGGTGGATGATAGAGGTGTTCACAATCTATACAAGCAGCTTGTTAGTTCAGGGCATGCATTTGGTGCAAAACGTTGGATTGCCACCTTGGATAGACAATGTGAAAGGCTTGCTTGCGCCATGGCAACAAACATACCCACAGTAGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGTATGCTGAAACTGGCAGAGAGAATGGTTATAAGTTTTTGTGCTGGAGTGAGTGCATCTACTGCACACACATGGACAACACTCTCTGGAACTGGAGCTGATGATGTAAGGGTCATGACACGTAAGAGTGTTGATGATCCAGGAAGGCCTCCTGGCATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTCCCAGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGTGACGAGAACTCTAGAAGTGAGGCTGCATTATTGTCTGCTCATAGGTTACCAGACATTGTTGTTCATTGGTGGGATATTCTTTCGAACGGAGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGAAGAGACACAGGAAATTGTGTCTCTCTACTTCGTGTGAATAGTGCAAATTCAAGCCAGAGTAACATGTTGATATTGCAAGAGAGTTGCGCAGACTCAACTGGTTCATTTGTGATATATGCTCCAGTTGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCTGATTACGTGGCCCTTCTTCCTTCAGGATTTGCTATTCTCCCAGATGGGACCACTGCACATGGAGGAAGCATCGGTGACACAGGACATGGTGGATCTCTTTTGACTGTGGCCTTCCAAATCTTGGTTGATTCAGTTCCAACAGCAAAACTCTCTCTTGGATCTGTTGCCACTGTTAACAATCTTATTGCCTGCACTGTCGAGAGAATTAAGACTGCTTTATCTGGTGAAGTTGCTTGA 2385 0.4654 MPAGIMIPARNMPSMIGRNGSVGGFGLSSGLSLGQIENHKGPESQRSIEMFQPNLMEAGQLLPLDMPQNTSESDVPRIREDDFDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQIKTQHERHENTQLRTENDKLRADNMRFREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGGFGGQPAGIGGDMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLATLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVSLVEILMDVVLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLACAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEAALLSAHRLPDIVVHWWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGSIGDTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKTALSGEVA 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00900 794 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Vimu4g00900 794 CDD START_ArGLABRA2_like 298 518 - -
Vimu4g00900 794 FunFam Homeobox-leucine zipper protein HDG1 95 182 - -
Vimu4g00900 794 Gene3D - 94 182 - -
Vimu4g00900 794 SUPERFAMILY Bet v1-like 539 786 - -
Vimu4g00900 794 Pfam START domain 304 519 IPR002913 GO:0008289
Vimu4g00900 794 SMART START_1 303 519 IPR002913 GO:0008289
Vimu4g00900 794 Coils Coil 172 192 - -
Vimu4g00900 794 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Vimu4g00900 794 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Vimu4g00900 794 CDD homeodomain 109 167 IPR001356 GO:0003677
Vimu4g00900 794 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 107 789 IPR042160 -
Vimu4g00900 794 SMART HOX_1 107 170 IPR001356 GO:0003677
Vimu4g00900 794 ProSiteProfiles START domain profile. 294 522 IPR002913 GO:0008289
Vimu4g00900 794 Gene3D - 385 516 IPR023393 -
Vimu4g00900 794 MobiDBLite consensus disorder prediction 82 117 - -
Vimu4g00900 794 SUPERFAMILY Bet v1-like 294 520 - -
Vimu4g00900 794 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Vimu4g00900 794 FunFam Homeobox-leucine zipper protein GLABRA 2 303 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00900 Vimu-Chr4 7409969 7415441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00900 50 794 Homeobox Transcription Factor Family AT1G05230 76.127 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu4g00900 START 2.9e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00900 K09338 - gmx:100809556 1424.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00900 4 7409969 7415441 Vimu4g00900 4 7409969 7415441 ECH
Vimu4g00900 4 7409969 7415441 Vimu5g01589 5 27392971 27397106 PCT