Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00897 ATGCTTTCGATCATATATAACAAGTCTTCAAAACTGTTGCAACACGACAAGCTTTCACACATTAAGTTTCGTGTTGAGATGGAGGTGATGTGGGTCACAAGTCATGGAAGAATTTTTGTGGGAAGGGTGTTGTTTCTCTTGGTTTTGTTCTTGTGGATTCAGACGCAGGCAGTGGTGGGAAGGACAAGAACTACTGTCACAAACTCTTCTACTTCTTCGACACCGAGAGTTTTCAGAGTTGGAGCACTGTTCAGTCTTGATTCTATAATTGGAAGATCGGCTGAACCTGCAATCGTGGCTGCTTTCGAAGATATTAATGCTGATTCAAGCATTCTCCCTGGCATTAAACTTGAAGCTGCTTTGCATGATACAAATTGCAGTGGCTTTGCTGGAACAATGGAAGCTTTGCAGTTAATGGAGGATGAAGTGATTGCTGCAATTGGTCCACAGTCCTCGGGAATAGCCCATGTCATCTCTCATGTGGTCAATGAACTCCATGTCCCTCTTATTTCGTTTGGGGCAACAGACCCTTCTCTATCATCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTATTATCAGATGTATGCAATTGCAGATTTGGTTGATTACTACAGATGGAGGGAGATAATAGCCATTTATGTAGATGATGATAATGGAAGAAATGGAATTTCAGTACTTGGAGATGCTCTGGCAAAAAAACGTTCCAAGATCTCTTACAAGGCTGCATTCCCTCCTGGGGCACCCAGGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAGTCAAGGGTCTTCGTTTTGCACGTTAATCCTGAAACTGGTTTGAGCATTTTTTCTATTGCTCAGAAGCTGGGAATGATGGACAGTGGCTATGTATGGATTGCAACAGATTCGCTTGCTTCAGCACTTGATTCATTAGAGCCAATTGATCCTAAGATATTGAATCTCCTACAAGGGGTTTTGGCTTTACGTCATCACACTCCTGATACTAATGAAAAGAAGAATTTCCTTTCCAGAATGAAGAGACTACAAAACAAGGAGACTCCAAGCTTCAATTCCTATGCAGTGTATGCATATGATACAGTTTGGTTAGTAGCCCATGCTCTTGATACTTTTTTAAAAGAAGGTGGTGTGGTATCTTTCTCCTCTGACCCTAAGTTAAGCGACACAAATGGAAGCACACTGCATTTAGAATCACTTCATGTTTTTGATGAAGGTCCTACTTTTCTGCAGACAGTTTTGGCAACCAACTTCACTGGTCTGACAGGACTAGTTCAGTTTGATAATGAAAGGAATAGAATTCGTCCAGCATATGATATCTTGAACATAGGTGGATCAGGAATGCGCAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCTCCAGAAATTCTGTATAAGAAGCCACCTAACACTTCAACAAGCAGCCAGCAACTATACGGTGTTATTTGGCCTGGAGAAACTGCAGTTAAACCAAGGGGATGGGTGTTTCCCAACAATGGAAAGCCACTGAGAATTGCAGTGCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGAGTAAGAGGCTATTGCATTGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCGCGACAATACATATTATTTGGACCTGGTGATAGAAATCCTAGCTACGATGACCTTGCTAGTCAAGTTGCACTAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTCCCCAACAGGACAAGGTTTTTGGATTTTACACAACCTTACATAGAATCAGGCCTGGTTGTTGTTGTTCCTGTCAAAGAGATCAAATCAAGTCCTTGGTCTTTCCTCCAGCCCTTCACTGCTGAAATGTGGTGTGTTACTGGTGCCTTTTTTATCCTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCGGAGTTCCGTGGTAAACCAAAGAAACAAATCATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTGGTCTTGGGAGATTGGTTCTAATCATATGGCTTTTTGTGGTGCTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCAATCCTCACAGTGCAGCAACTGTCATCACAGATTGAAGGAATTGACAGCCTGATCTCAAGCAATCAACCCATTGGAATTCAAGAAGGGTCGTTTGCACGAAAGTATTTGACAGAAGAACTCAACATACAACCATCAAGGATAGTTACATTGAAAAATATGGAGGCATACATTGATGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTGTAGCCGTTGTTGATGAGCTTCCTTATATTGAAATACTAATGTCAAATACCAACTGCAAGTTCAGAACCGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCATAGGGACTCTCCCCTTGCCGTTGACATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGAGACCTGCAAAAAATCCATGACAAATGGCTCTTAAAACAGGATTGTTCTACACAAGAAAGTGATGTTAATTTAAACAAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTTGTTTGTGGCATTGCATGTTTCCTTGCTTTGATTGCATTCTTCATTAGAGTGCTATTTCAGTACACAAAATTCAGCCCAGAACCTGAGCAACATGATGAGGAAAATTCACCAGACAGGCCTAAAGGTAAAGGGCCTTTCGGAACTACTTCTAGCTTCAGAGACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAAGCAGAAGAGTAAGAAAAGAAGACGCAGTCTGAGCTCAGATGGCCAATCTTCTTCATCCGCCTAA 2919 0.4162 MLSIIYNKSSKLLQHDKLSHIKFRVEMEVMWVTSHGRIFVGRVLFLLVLFLWIQTQAVVGRTRTTVTNSSTSSTPRVFRVGALFSLDSIIGRSAEPAIVAAFEDINADSSILPGIKLEAALHDTNCSGFAGTMEALQLMEDEVIAAIGPQSSGIAHVISHVVNELHVPLISFGATDPSLSSLQYPYFVRSTQSDYYQMYAIADLVDYYRWREIIAIYVDDDNGRNGISVLGDALAKKRSKISYKAAFPPGAPRKDISDLLNGVNLMESRVFVLHVNPETGLSIFSIAQKLGMMDSGYVWIATDSLASALDSLEPIDPKILNLLQGVLALRHHTPDTNEKKNFLSRMKRLQNKETPSFNSYAVYAYDTVWLVAHALDTFLKEGGVVSFSSDPKLSDTNGSTLHLESLHVFDEGPTFLQTVLATNFTGLTGLVQFDNERNRIRPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLYGVIWPGETAVKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRQYILFGPGDRNPSYDDLASQVALNNYDAAVGDVTIVPNRTRFLDFTQPYIESGLVVVVPVKEIKSSPWSFLQPFTAEMWCVTGAFFILVGTVVWILEHRHNPEFRGKPKKQIMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSNQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYIEILMSNTNCKFRTVGQEFTKSGWGFAFHRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKQDCSTQESDVNLNKLSLSSFWGLFLVCGIACFLALIAFFIRVLFQYTKFSPEPEQHDEENSPDRPKGKGPFGTTSSFRDLIYFVDKKEKEIKEILKQKSKKRRRSLSSDGQSSSSA 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00897 972 Gene3D - 193 466 - -
Vimu4g00897 972 Gene3D - 508 623 - -
Vimu4g00897 972 SUPERFAMILY Periplasmic binding protein-like II 489 855 - -
Vimu4g00897 972 PIRSF IGluLR_plant 38 972 IPR017103 -
Vimu4g00897 972 Pfam Ligand-gated ion channel 856 887 IPR001320 GO:0015276|GO:0016020
Vimu4g00897 972 MobiDBLite consensus disorder prediction 952 972 - -
Vimu4g00897 972 FunFam Glutamate receptor 193 351 - -
Vimu4g00897 972 Pfam Bacterial extracellular solute-binding proteins, family 3 570 855 IPR001638 -
Vimu4g00897 972 SMART GluR_14 514 856 IPR001320 GO:0015276|GO:0016020
Vimu4g00897 972 MobiDBLite consensus disorder prediction 908 931 - -
Vimu4g00897 972 Gene3D - 96 441 - -
Vimu4g00897 972 Coils Coil 940 960 - -
Vimu4g00897 972 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 364 376 - -
Vimu4g00897 972 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 91 107 - -
Vimu4g00897 972 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 151 179 - -
Vimu4g00897 972 FunFam Glutamate receptor 624 754 - -
Vimu4g00897 972 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 80 917 IPR015683 -
Vimu4g00897 972 CDD PBP1_GABAb_receptor_plant 79 470 IPR044440 -
Vimu4g00897 972 FunFam Glutamate receptor 750 858 - -
Vimu4g00897 972 Gene3D - 745 858 - -
Vimu4g00897 972 Gene3D - 624 744 - -
Vimu4g00897 972 CDD GluR_Plant 511 854 - -
Vimu4g00897 972 FunFam Glutamate receptor 508 624 - -
Vimu4g00897 972 SUPERFAMILY Periplasmic binding protein-like I 73 505 IPR028082 -
Vimu4g00897 972 Pfam Receptor family ligand binding region 95 450 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00897 Vimu-Chr4 7379218 7384598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00897 75 821 Ion Channels AT1G05200 68.273 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00897 K05387 - gmx:100799912 1625.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00897 4 7379218 7384598 Vimu4g00897 4 7379218 7384598 ECH
Vimu4g00897 4 7379218 7384598 Vimu5g01593 5 27426415 27432202 PCT