Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00896 ATGTGGTGTGCTACGGCTGCCTCATTTTTGGTGATTGGAATTGTTATATGGATTCTTGAGCACCGAGTCAATAATGACTTCCGTGGTCCTCCTAAGAAGCAAATTGTAACAATGTTAATCTGGCCTATAGGGTACCAAGTGGGGTCATTTGCTTACAGCTATCTGGCAGATAATCTTTATATTTCAAAATCAAGGCTTGTTTCATTAGGCTCCCCTGAGGAATATGCTTTAGCACTGCAGAAGGGACCTTCTGGTGGAGGGGTGGCAGCTATTGTAGATGAGCTTCCGTATGTTGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATCATTGGACAGCCATTCGCAAGAAACAGTTGGGGATTTGCTTTTCAAAGAGAATCTCCTTTTGCCTTTGACATGTCTACAGCAATTTTGAGACTTTCTGAGAATGGCGATCTTCATAGGTTACAGGAGAGGTGGTTCTGTAAAATGGGCTGTCCTGAAGAAAGGACAAGCAACTCCAAGCCTGACCAGCTTCACTTGATTAGCTTTTGGGGCCTGTATCTTTCATGTGGTGTTGTCTCTCTTGCTGCACTCGTTCTGTTTCTGCTGCGAATGATTCGGCAATATGCCCGTTTCAAAAAAAAGCAAAGGGATATTGCTTCTTCGTCCTCAGAACAACCATCAGGCAGCCACTGTTCCCAGGTTGTTGTTAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCCATCTGACAATCATCACAACCCTAACTGA 780 0.4295 MWCATAASFLVIGIVIWILEHRVNNDFRGPPKKQIVTMLIWPIGYQVGSFAYSYLADNLYISKSRLVSLGSPEEYALALQKGPSGGGVAAIVDELPYVELFLSKETDFGIIGQPFARNSWGFAFQRESPFAFDMSTAILRLSENGDLHRLQERWFCKMGCPEERTSNSKPDQLHLISFWGLYLSCGVVSLAALVLFLLRMIRQYARFKKKQRDIASSSSEQPSGSHCSQVVVNFFNFIDEKEEAIKKMFTPSDNHHNPN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00896 259 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 41 IPR015683 -
Vimu4g00896 259 SMART GluR_14 3 157 IPR001320 GO:0015276|GO:0016020
Vimu4g00896 259 Gene3D - 43 124 - -
Vimu4g00896 259 SUPERFAMILY Periplasmic binding protein-like II 43 156 - -
Vimu4g00896 259 FunFam Glutamate receptor 52 159 - -
Vimu4g00896 259 Gene3D - 125 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00896 Vimu-Chr4 7366096 7371256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00896 1 257 Ion Channels AT2G32400 41.337 5.16e-82 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00896 K05387 - gmx:100796389 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00896 4 7366096 7371256 Vimu4g00896 4 7366096 7371256 ECH
Vimu5g01593 5 27426415 27432202 Vimu4g00896 4 7366096 7371256 PCT