Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00884 ATGGCGCGGACATTCTCCAACAACGACAGCTCCAACGATGAAACAGGCGATGACAGCAATGCTACAACGAAGGAAGAGGGCGAGGTCAAAGGTCGCGTGAGGAAGGGGCCCTGGACCCCATCAGAAGACGCCATCCTTGTAGAGTACGTGAAGAAGCACGGTGAAGGGAATTGGAACTCTGTGCACAAGAATTCTGGGTTGTACAGGTGCGGCAAAAGCTGCAGACTTCGCTGGGCAAACCATCTCAGGCCTAATCTAAAGAAAGGTGCATTCTCTCCTGAGGAAGAACAAATCATCATCGACCTTCATTCCAAGCTTGGAAACAAATGGGCCCGAATGGCCGCACAGTTACCTGGCAGGACCGACAATGAAATAAAAAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTACCCATTTATCCTCCTGAGCTGCATGCAGAAGCCACTGCATGCCATGTACAACACCGCTACTTGGAACACCAACCTCATTCATCATTTGCTTTACTCCTATCTTCTTGTTACCCCAAGAAGCTCAATGACCCTAGCCAAACCAACGGTTTCAATGCCAATCCGCTGCAAAACCATCCTGATTCTTCCAACTATTACATTAATCCAAGCCAGAAGCACTTCAAGTTTTCCAATGACAATGGTGGAAGTATAAATCTTGCTTTGCCATTATCTCCTCTTTCTCAATATGGATCATCATCATCCACCCTTCTTAACCACAGTTTTGGTGATCATGGCATTATATCAGGGTCCCCATATGAATCCTTTCCTTTGGTGTCAGGATCCACCCCTGACATCTCTTCCAACCAAACACCAACCCCAGCTTCATCCTATGCTAGTGGTGTTGATGGCCTGATGGGATCTTCAACCATGGCTAATAATAATAATAATAACAATGACTACTATGAAGTTGCACCGTTGTCACCTCCAAGAAACAGTGGACTGCTGGATGCTCTAGTGATGGAGGCTCAAGGACTTTCTCACAATGACAAGTCCAAGAAAGAGGAGGACCCGAGCCTTGCTGGAAAACTATCTTGTAAGAGAAAGAACATGGAATATGCGGATGAGGGACGCACTGAACCTATGGTGTCAGCCATGAAGAAGAACAGTAGAAACAGTACTAGTACTGAAAACCAGAGGGATGATGATAATAGCTTCTCTCAATTGTCAAAAGGAAAGAAAGTGATGAGAGAGGATCCGATGGAAGAGATGAACTCGATGGACGATGATTTGTTTAGTCTGCTGAATCAGTTTCCCTTAGAAACGCCAATGCCTGAGTGGTACCGTAGAGGGGAGAGTCAGTCATTGGGACTTGAAAATCAGCCGAATGCTTCAACACCTGACCCCGCTGATCAAGAGTATGCTTGGACTCTAGGAACTTGCTGGAACAACATGCCCAGCATATGCTAA 1428 0.4622 MARTFSNNDSSNDETGDDSNATTKEEGEVKGRVRKGPWTPSEDAILVEYVKKHGEGNWNSVHKNSGLYRCGKSCRLRWANHLRPNLKKGAFSPEEEQIIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPIYPPELHAEATACHVQHRYLEHQPHSSFALLLSSCYPKKLNDPSQTNGFNANPLQNHPDSSNYYINPSQKHFKFSNDNGGSINLALPLSPLSQYGSSSSTLLNHSFGDHGIISGSPYESFPLVSGSTPDISSNQTPTPASSYASGVDGLMGSSTMANNNNNNNDYYEVAPLSPPRNSGLLDALVMEAQGLSHNDKSKKEEDPSLAGKLSCKRKNMEYADEGRTEPMVSAMKKNSRNSTSTENQRDDDNSFSQLSKGKKVMREDPMEEMNSMDDDLFSLLNQFPLETPMPEWYRRGESQSLGLENQPNASTPDPADQEYAWTLGTCWNNMPSIC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00884 475 MobiDBLite consensus disorder prediction 1 37 - -
Vimu4g00884 475 FunFam Transcription factor MYB97 90 166 - -
Vimu4g00884 475 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Vimu4g00884 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Vimu4g00884 475 MobiDBLite consensus disorder prediction 1 17 - -
Vimu4g00884 475 MobiDBLite consensus disorder prediction 332 400 - -
Vimu4g00884 475 MobiDBLite consensus disorder prediction 18 37 - -
Vimu4g00884 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Vimu4g00884 475 Gene3D - 35 87 - -
Vimu4g00884 475 Gene3D - 90 136 - -
Vimu4g00884 475 MobiDBLite consensus disorder prediction 333 362 - -
Vimu4g00884 475 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Vimu4g00884 475 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Vimu4g00884 475 SMART sant 34 84 IPR001005 -
Vimu4g00884 475 SMART sant 87 135 IPR001005 -
Vimu4g00884 475 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vimu4g00884 475 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 13 441 - -
Vimu4g00884 475 FunFam MYB-related transcription factor 34 87 - -
Vimu4g00884 475 MobiDBLite consensus disorder prediction 380 400 - -
Vimu4g00884 475 CDD SANT 37 82 IPR001005 -
Vimu4g00884 475 CDD SANT 90 131 IPR001005 -
Vimu4g00884 475 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00884 Vimu-Chr4 7123174 7125546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00884 33 475 MYB Transcription Factor Family AT2G32460 38.327 1.59e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g00884 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00884 K09422 - gmx:100798860 711.835