Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00877 ATGGGAAAAACAGGGAATGAGCAGCAGCCGAAGGATGATACTGTTGTGGAAGATGAAACCAAGGGCCGGAGTAACAACAATAAAGACAAAGGTGTTTCCGTTATGTTGTCTGATTCAGATGTAGTTTCTGGTTCCGATTCCGATTCCGATTATGAAGATGAAGAATTGGTTGGGGGCTCGCTGCTGGACTTGAATAAATATCCATTTTCAAGCATCAGTTTTTCTGACGGAGAAGATTATGGTTCTGATTCATCTGATGGTGACATACCTTTATTCAAGAAGGCAAAGGTTCCGGGATCCAGAGAGAGAAGAAAGAGTATGAACACAGAAAAAGGAGAACCGAGTGATGTGGTGAGGGTGGTAGATCATGAATATTCAGTGATTTCACCAGTATTGGTTCCATCTGCTTTTAAGGGAACTAGGAAGAGGAAATATACAAAAAAAGGAAGTAAAGGAGATTCTCGTCCAGTGTTGTTGTGGAATGCATGGGAAGAGGAGCAAGAGAAATGGATTGATCAGCATATATCAGAAGATTTTGACTTAGATAATCAGAGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATACCAGAGGGAATGGTTAGCTTGGGCTTTGAAACAAGAACATTCTTCAAGTAGAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCAAGACAGTTGTGAACCAGATCAATCCATACCATGTTCATCCAACCTGTTGCCTGCTATCAAAGGAACACTTGTCATATGTCCAGTGGTTGCTGTTACTCAGTGGGTCAGTGAGATTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTTCTGGTCTATCACGGGGCTAATAGAGGGAGGAGTGGGGATCGATTTGCAGATTATGATTTTGTGATAACTACATACTCTGTTGTTGAGAATGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCAAGTAAGTTGATGTATCATCAGAGCTATTTTTGTGGACCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAGAAAAGAGAAGTTACTAAAGGGAAGACCAAGGAATGCGAAAGTAGCAAGATTTTGAAGGGTTCTATCAAGAAAAAGGGAGACAAAATGTGCATAGATATGGAAGAATCTGATGCTGTACCTGTACGTAGCGATAGGTCATTTCTCCATGCTGTTAAATGGCAAAGGATCATATTGGATGAGGCACACTATATCAAATCTAGACACTGTAACACTGCTAAAGCAGTTCTTGCTTTAGATTCTACCTACAAATGGGCGTTGAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCGCTTATACGATTCCTGCAAATAACTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGCTCTAAAGAATGTTCGATCTGCACTCACAGTTCCGTGCGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGGAAAAGAGCTATGATACTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACAAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTCCTGATTTCATTGGCATTCTTTCTTTTAACAGATACATTGAAGCAAATACACTGATGCATAATTATGCTCATATATTTGATCTCCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTTCAGGTTCAAGAAGTGCAGTTATGGCCAACAATGCTACTACCGTTGAACAAATTTGTGGTATATGCCACGAGCCAGTAGAAGATCTTGTTGTTACCTCCTGTGAACATTCATTTTGCCGTGCATGCTTGATAGACTACTACTCTACTTCCTTGGGCCAAGTATCATGCCCTGCTTGCTCCAAATTACTTACAGTTGATTTAACATCAAACAAGGATGCTGGGGATCAAGTTAAAACAACAATTAAGGGTTTCAGATCCTCGAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACGAGTACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCGTTTTTGGATCTTATAAACTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCTTTGAATGCTAGGGATGCTGCCATTCGGAGATTTACTGAAGATCCAGATTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACACGTCTTCCTTATGGACCCTTGGTGGAACCCTGCCGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATACAAACCTATAAGAATTGTGAGGTTTGTCATCGAGAACACAATCGAGGAGAGAATTTTGAAACTCCAAGAGAAGAAAGAACTCGTGTTTGAAGGGACTATAGGTGGTTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTGTTTGTTACCTAA 2679 0.4099 MGKTGNEQQPKDDTVVEDETKGRSNNNKDKGVSVMLSDSDVVSGSDSDSDYEDEELVGGSLLDLNKYPFSSISFSDGEDYGSDSSDGDIPLFKKAKVPGSRERRKSMNTEKGEPSDVVRVVDHEYSVISPVLVPSAFKGTRKRKYTKKGSKGDSRPVLLWNAWEEEQEKWIDQHISEDFDLDNQSEVMNETAEAPSDLTMPLLRYQREWLAWALKQEHSSSRGGILADEMGMGKTIQAIALVLAKREFQDSCEPDQSIPCSSNLLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGANRGRSGDRFADYDFVITTYSVVENEYRKHMMPPKERCPYCGKLFLPSKLMYHQSYFCGPDAVRTEKQSKQAKKKREVTKGKTKECESSKILKGSIKKKGDKMCIDMEESDAVPVRSDRSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSICTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIPDFIGILSFNRYIEANTLMHNYAHIFDLLTRLRQAVDHPYLVVYSQSSGSRSAVMANNATTVEQICGICHEPVEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPACSKLLTVDLTSNKDAGDQVKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLNARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00877 892 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 485 IPR014001 -
Vimu4g00877 892 Pfam SNF2-related domain 216 489 IPR000330 GO:0005524|GO:0140658
Vimu4g00877 892 SMART ultradead3 198 490 IPR014001 -
Vimu4g00877 892 Gene3D - 360 571 IPR038718 -
Vimu4g00877 892 Gene3D - 170 338 IPR038718 -
Vimu4g00877 892 SUPERFAMILY RING/U-box 634 685 - -
Vimu4g00877 892 SMART ring_2 638 678 IPR001841 -
Vimu4g00877 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 557 IPR027417 -
Vimu4g00877 892 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 50 890 - -
Vimu4g00877 892 SMART helicmild6 753 836 IPR001650 -
Vimu4g00877 892 CDD DEXDc_SHPRH-like 202 500 - -
Vimu4g00877 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 708 IPR013083 -
Vimu4g00877 892 MobiDBLite consensus disorder prediction 75 114 - -
Vimu4g00877 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 429 890 IPR027417 -
Vimu4g00877 892 ProSiteProfiles Zinc finger RING-type profile. 638 679 IPR001841 -
Vimu4g00877 892 MobiDBLite consensus disorder prediction 10 26 - -
Vimu4g00877 892 MobiDBLite consensus disorder prediction 27 44 - -
Vimu4g00877 892 CDD SF2_C_SNF 720 847 - -
Vimu4g00877 892 MobiDBLite consensus disorder prediction 1 56 - -
Vimu4g00877 892 Pfam Zinc finger, C3HC4 type (RING finger) 638 678 IPR018957 GO:0046872
Vimu4g00877 892 ProSitePatterns Zinc finger RING-type signature. 653 662 IPR017907 -
Vimu4g00877 892 MobiDBLite consensus disorder prediction 95 114 - -
Vimu4g00877 892 Pfam Helicase conserved C-terminal domain 722 836 IPR001650 -
Vimu4g00877 892 Gene3D - 578 890 IPR027417 -
Vimu4g00877 892 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 718 882 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00877 Vimu-Chr4 7058933 7065348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00877 129 892 RAD5 or RAD16-like Gene Family AT1G05120 64.676 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu4g00877 SNF2_N 3e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00877 K15083 - gmx:100786366 1433.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00877 4 7058933 7065348 Vimu4g00877 4 7058933 7065348 ECH