Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00874 ATGGAGTGGACTAGAGGCTTCATCATAGGACGTGGCTCATCAGCCACCGTCTACACTGCCACCTCCGCCCACTCCTCCACCGTTGCCGCTGTCAAGACTGCAGAGTTATCCCCGTCAAACTTAGAAAAGTTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCACGTAGTTGCCTACAAAGGTTGTAACACTACAGAGGAAAACAACACCCTGTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAACTCTCTCTCAGGAAATTCGCCGGCACGCTGGTCGGCTCAGCGAGCCCACCATCGTGAACTACGTTCGACAACTCCTGCAGGGGCTGGAGTACTTGCACAATAAGGGTGTTGTGCATTGTGATATTAAAGGTAGCAACATTTTGATTGGGGAAGATGGGGCCAAGATTGGGGATTTTGGGTGTGCTAAATTGTGGAATGAGTCTCCGGTGGCGGCGATCGGCGGCACGCCAATGTTCATGGCCCCAGAGGTGGCGCGTGGGGAGGAGCAAGGGTACCCTGCTGATGTATGGGCGCTTGGGTGCACTGTGGTTGAAATGGCAACTGGGTTTGCGCCGTGGCCTAATTTAGAAGACCCTGTCACTGTGTTGTACCGCGTTGCATATTCCAATGAAGTTCCTGAGATTCCAAGTTTTCTGTCTGAAGAAGCAAGGGATTTCTTGGGGAAGTGTTTCAGGAGGAATCCTAAAGAGAGGTGGAACTGTAGTCAGCTTCTGAAGCATCCGTTTGTTGGGGAATTCAATTCCAACGACAAGGAAATTCAGCAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGAGCTTTTGGAATTCTGTGGAAGAGGCAGAGTGTGTCTCTGACCCTGGCAATGTGATTCAAATTAAAAGCTCTGATGAGTCTCCCAAGGGTAGGATCAGAAGGCTAGCTTTGTGTTCGGGGGATCCAATTTGGGAATTGAATGATGAAAATTGGATCACAACGAGGGGCAGTGAAGCAGGGGCTTCAAGTTGTGAAGGGTTGGATTTGGATGTTGTTAATATTAGAATTAGTGATTATTTTTGTGATGATTATTATAAATGTAGTGATGTTAGTGTTGAAGTTGGTAGTTTCAATTTTGAGGGAGGCGTTGATGAGATGGTTATCCCTTCAACATACGAGTTTTTATAA 1188 0.4722 MEWTRGFIIGRGSSATVYTATSAHSSTVAAVKTAELSPSNLEKLQREQRILSSLFSPHVVAYKGCNTTEENNTLWFNLFMEYMPFGTLSQEIRRHAGRLSEPTIVNYVRQLLQGLEYLHNKGVVHCDIKGSNILIGEDGAKIGDFGCAKLWNESPVAAIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNLEDPVTVLYRVAYSNEVPEIPSFLSEEARDFLGKCFRRNPKERWNCSQLLKHPFVGEFNSNDKEIQQSNSCSPTSILEQSFWNSVEEAECVSDPGNVIQIKSSDESPKGRIRRLALCSGDPIWELNDENWITTRGSEAGASSCEGLDLDVVNIRISDYFCDDYYKCSDVSVEVGSFNFEGGVDEMVIPSTYEFL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00874 395 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 290 - -
Vimu4g00874 395 Gene3D Transferase(Phosphotransferase) domain 1 2 306 - -
Vimu4g00874 395 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00874 395 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00874 395 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vimu4g00874 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vimu4g00874 395 CDD STKc_MAPKKK 2 256 - -
Vimu4g00874 395 SUPERFAMILY Protein kinase-like (PK-like) 4 288 IPR011009 -
Vimu4g00874 395 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00874 395 FunFam Mitogen-activated protein kinase kinase kinase 17 2 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00874 Vimu-Chr4 7052490 7053677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00874 3 336 MAP Kinase Kinase Kinase AT5G55090 49.565 2.27e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu4g00874 Pkinase 9e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00874 K20716 - gmx:100797801 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00874 4 7052490 7053677 Vimu2g01117 2 7388189 7389821 ECH
Vimu4g00874 4 7052490 7053677 Vimu4g00874 4 7052490 7053677 ECH
Vimu4g00874 4 7052490 7053677 Vimu7g02037 7 18263122 18264339 ECH
Vimu4g00874 4 7052490 7053677 Vimu5g01632 5 27872704 27873771 PCT