Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00872 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCCCCACAACCCAGTAGTTCTCAACTCTTTTCCTGAAGACAGTAACAACACCATCACTGGCCAACAAAAGTGGAAGAAACTTGCTCCTAACATGGATGCCACAGTTACCACAAACAGGTCTCCATCATCTTCTCCAAACACCAACCCCACCTCCACCTCCACCTCTACCATCCCCTTCCAAGTCAACCTTACCTCTGATAACAAAAGGCCCCACATCGACGAGATGGACTTCTTTCCTAACAAGACAGATGATGATCGTAAAAACTTTGCCTCTGCCTCCACCTCTGCACCTCCCTCACTAGACCACCTTCTTCACACACATGATCATTCATCCTCTCCTGCTATTTTGGAATTGAAAGTAAACACTGGTTTGAATCTTCTTACCACCAACACTGGTACTGATCATTCCATGGTGGACGATGAGACGTCCACTAATTCCGAAGAAAAAAGAGCCAAGAGTGAGATGGTTGTTCTCCAAGCTGAGCTTGAGAGAATGAAGGTGGAGAATCATAGGCTGAGGAACATGCTTGATCAGGTTAACACCAATTACAATGCCTTGCAGATGCATTTGGTAAGTATTATGCAAGAACAGAAGGAGGAGGAGGGTGAACAACAAGTGTTTGATGGAAAATTAGATGAGGAAAAACAAAGTGGGAATGGGGTCTTGGTGCCAAGACAATTTATGGATCTTGGGTTGGCTAGTAATGTTGATACTAATGAACCTTCTCATTCTTCCTCAGTGGGAAGAAGTCAGGATCTGTCAAAGTCGCCAATAAACAATGAAGTAGCATCCAAGGAATTTGACACCAAGAAGAATGGGAGTGCTAGTGATGAAGGATTTGATCAAGACAAGAAGGAATTTGGAAGGGGAATTGAAAGAGAAGACAGTCCCTCAGAAGGGGCTGCCGCTAATAGCAATGTTCCAAAGTTTAGTCCTCCACGAAACATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGATGACCGATCAATACTGATCACAACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCAGCTATTGCAATGGCACAAACAACTTCTGCAGCAGCTAGAATGCTGCTATCAGGATCTATGTCAAGTGCTGATGGCCTAATGAATGGAAACTTCCTGACAAGGACACTGCTCCCTTGCTCTTCTAGCATGGCCACTATCTCTGCATCAGCACCCTTCCCAACTGTTACATTGGATTTGACTCAGTCTCCAAACCCACTACAGTTCCCAAAGCCCCCAAACCAATTCCAAATCCCTTTCCCTGGTGTCCCTCAGAACTTTGCCAATTCCTCAGCCTCATTGCTGCCTCAGATATTTGGGCAGGCACTCTATAACCAGTCCAAGTTTTCTGGCCTCCAAATGTCTCAAGATGCAGAAACTTCCCAGTTGAGTAACCAATCTCAACGGCCACCGCCGCACCTTGCTGACACGGTTAATGCTGCCACTGCTGCCATTGCAGCTGACCCCAACTTCACGGCAGCTTTGGCAGCAGCCATCACTTCTATCATTGGGGGTGCACAGCCAAACAACAATACCAGTACCAATAATAATGGCGCCACATCCAACAACACCAGCAATGCCAATATTACATCAAACAACAACAAATAA 1776 0.4611 MARGGGLSIDSDPIGSFFPHNPVVLNSFPEDSNNTITGQQKWKKLAPNMDATVTTNRSPSSSPNTNPTSTSTSTIPFQVNLTSDNKRPHIDEMDFFPNKTDDDRKNFASASTSAPPSLDHLLHTHDHSSSPAILELKVNTGLNLLTTNTGTDHSMVDDETSTNSEEKRAKSEMVVLQAELERMKVENHRLRNMLDQVNTNYNALQMHLVSIMQEQKEEEGEQQVFDGKLDEEKQSGNGVLVPRQFMDLGLASNVDTNEPSHSSSVGRSQDLSKSPINNEVASKEFDTKKNGSASDEGFDQDKKEFGRGIEREDSPSEGAAANSNVPKFSPPRNITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCADDRSILITTYEGNHNHPLPPAAIAMAQTTSAAARMLLSGSMSSADGLMNGNFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPNQFQIPFPGVPQNFANSSASLLPQIFGQALYNQSKFSGLQMSQDAETSQLSNQSQRPPPHLADTVNAATAAIAADPNFTAALAAAITSIIGGAQPNNNTSTNNNGATSNNTSNANITSNNNK 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00872 591 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 144 575 IPR044810 GO:0003700
Vimu4g00872 591 Gene3D WRKY domain 320 396 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g00872 591 MobiDBLite consensus disorder prediction 51 75 - -
Vimu4g00872 591 MobiDBLite consensus disorder prediction 561 591 - -
Vimu4g00872 591 Coils Coil 166 200 - -
Vimu4g00872 591 ProSiteProfiles WRKY domain profile. 329 395 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g00872 591 Pfam WRKY DNA -binding domain 336 393 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g00872 591 MobiDBLite consensus disorder prediction 282 314 - -
Vimu4g00872 591 MobiDBLite consensus disorder prediction 149 171 - -
Vimu4g00872 591 SMART WRKY_cls 334 394 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g00872 591 SUPERFAMILY WRKY DNA-binding domain 332 395 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g00872 591 MobiDBLite consensus disorder prediction 252 281 - -
Vimu4g00872 591 MobiDBLite consensus disorder prediction 252 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00872 Vimu-Chr4 7029808 7032381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00872 77 573 WRKY Transcription Factor Family AT1G62300 45.896 2.94e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu4g00872 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00872 - - gmx:100127384 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00872 4 7029808 7032381 Vimu2g01119 2 7413230 7415576 ECH
Vimu4g00872 4 7029808 7032381 Vimu4g00872 4 7029808 7032381 ECH
Vimu4g00872 4 7029808 7032381 Vimu5g00387 5 3586552 3588211 ECH
Vimu4g00872 4 7029808 7032381 Vimu5g01633 5 27915601 27919099 PCT