Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00852 ATGAGGTTGAAGGTGGTGTATTCTGTTCATCATGATTTGCCAGTGAAGCGTCATTTTTTGATGATCAAGGTTAGTGTTCCATGCAGCAGTATGCTCACCATTGTTACGGTTAGATGTGGACACTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCACTTCAACCTTTTCCTTCTCAAGAAACTCAGCATCTTTCTACCGTTGCTAAGTTACAGAGACAGCACCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTGGGATCATCTTCAAAATGCAAATCATTCGAGTCCGTAGAGCATGAGCAACCTAGGATTCCTCCAATTCGTCGTGAGTGA 336 0.4345 MRLKVVYSVHHDLPVKRHFLMIKVSVPCSSMLTIVTVRCGHCANLLSVNMGASLQPFPSQETQHLSTVAKLQRQHLSVQEACSKELGSSSKCKSFESVEHEQPRIPPIRRE 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00852 111 PANTHER PROTEIN YABBY 6-RELATED 21 104 IPR006780 GO:0007275
Vimu4g00852 111 Pfam YABBY protein 22 96 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00852 Vimu-Chr4 6801629 6809557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00852 21 109 C2C2-YABBY Transcription Factor Family AT1G08465 43.011 2.69e-14 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vimu4g00852 YABBY 7.2e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00852 K25796 - gmx:100785458 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00852 4 6801629 6809557 Vimu5g01650 5 28092517 28098647 PCT