Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00845 ATGTTTGGGAGGGCGCCCAAGAAAAGCGACAGCACTAGGTACTATGAAATCCTTGGCGTAGCCAAGAACGCGTCGCCGGAGGATTTGAAAAAGGCTTACAAGAAAGCCGCCATAAAAAATCACCCCGACAAAGGTGGTGATCCCGAGAAGTTCAAAGAGCTTGCTCAAGCCTATGAGGTTCTGAGTGACCCTGAGAAACGTGAGGTTTACGATACTTACGGTGAAGATGCTCTTAAGGAGGGAATGGGTGGCGGCGGCGGTGGGCACGACCCGTTTGATATCTTCAGTTCGTTCTTTGGTGGAAATCCGTTTGGTGGGGGTGGTAGCAGTAGAGGAAGGAGACAGAGACGGGGAGAAGATGTGGTTCACCCTCTGAAGGTCTCTCTGGAGGATCTTTATCTTGGAACGTCTAAGAAACTTTCTCTCTCACGAAATGTTTTGTGCTCAAAATGCAATGGACTGACATTGAGCTGTGTTTTGCAGCCTGATACAATCACTGGGGATATTGTATTTGTCTTGCAACAGAAGGAACATCCAAAGTTCAAAAGAAAGGCTGAAGACCTTTATGTCGAGCATACTTTGTCTCTCACTGAGGCTCTATGTGGTTTCCAGTTTGTGCTGGCTCACTTGGATGGCCGACAACTCCTTATCAAATCAAACCCTGGGGAGGTTGTCAAGCCTGATTCATACAAGGCTATAAACGATGAGGGAATGCCAATGTACCAGAGGCCGTTCATGAAGGGGAGGCTTTACATTCATTTCACGGTGGAATTTCCTGATTCTCTGAGCCTTGAACAGGTGAAGGCCATAGAGACTGTTTTGCCAGCGAAGACTTCATCACAAAAGTTGACAGACATGGAGCTGGACGAATGTGAAGAGACTACACTTCATGATGTGAACATGGAGGAAGAGTCAAGGAGGAGGCAACAAACTTCGCAGGAGGCGTACGAGGAGGATGAGGACATGCATGGCGGTGCTCAGAGAGTACAGTGCGCTCAGCAGTAA 1005 0.4816 MFGRAPKKSDSTRYYEILGVAKNASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREVYDTYGEDALKEGMGGGGGGHDPFDIFSSFFGGNPFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGLTLSCVLQPDTITGDIVFVLQQKEHPKFKRKAEDLYVEHTLSLTEALCGFQFVLAHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGRLYIHFTVEFPDSLSLEQVKAIETVLPAKTSSQKLTDMELDECEETTLHDVNMEEESRRRQQTSQEAYEEDEDMHGGAQRVQCAQQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00845 334 CDD DnaJ 14 63 IPR001623 -
Vimu4g00845 334 MobiDBLite consensus disorder prediction 294 325 - -
Vimu4g00845 334 Pfam DnaJ C terminal domain 164 259 IPR002939 -
Vimu4g00845 334 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Vimu4g00845 334 Pfam DnaJ domain 14 71 IPR001623 -
Vimu4g00845 334 Gene3D - 110 159 - -
Vimu4g00845 334 FunFam Chaperone protein dnaJ 3 205 276 - -
Vimu4g00845 334 SMART dnaj_3 12 66 IPR001623 -
Vimu4g00845 334 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vimu4g00845 334 FunFam dnaJ protein homolog 10 109 - -
Vimu4g00845 334 CDD DnaJ_C 119 262 - -
Vimu4g00845 334 MobiDBLite consensus disorder prediction 294 334 - -
Vimu4g00845 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 179 IPR008971 GO:0006457|GO:0051082
Vimu4g00845 334 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vimu4g00845 334 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vimu4g00845 334 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vimu4g00845 334 Gene3D - 178 260 - -
Vimu4g00845 334 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Vimu4g00845 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 181 269 IPR008971 GO:0006457|GO:0051082
Vimu4g00845 334 Gene3D DnaJ domain 10 109 IPR036869 -
Vimu4g00845 334 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 153 IPR044713 GO:0006457|GO:0030544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00845 Vimu-Chr4 6760821 6763055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00845 14 73 C2H2 Transcription Factor Family AT1G74250 42.029 3.20e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00845 K09503 - gmx:100778677 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00845 4 6760821 6763055 Vimu4g00845 4 6760821 6763055 ECH
Vimu4g00845 4 6760821 6763055 Vimu5g01654 5 28132376 28134620 PCT