Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00843 ATGGGTGTATCAGGGAAGTGGATTAGAGCATTGATTGGTCTAAAGAAATCAGAAAAGCCAGAGTCTTCTCAGAAGGACGGAAATAAGGTTGGCAAGTTACATCATCAACGAAGGCAAGTTGTTGAATTTGATAATGGTAAACTTCCAAACGAATTGGATTGTGAAGCTACTCCACCTACTGGAGATGATAATGTCCATGCAAACCTTGATGCCAATTATTCGTCTTCTTCTTCCCAACAAGCAACTGATGCTGCACATGATCAACAGATGAAGGAGGAATGGGCTGCAATACACATTCAAACAGCGTTTCGAGGATTTTTGGCCAGAAGAGCATTACGAGCCTTGAAAGGTGTGGTAAGGCTTCAGGCCCTAGTAAGAGGCCATGCAGTGAGAAAACAAGCAGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAAGCTCGTGTTCGGGCAAGGCGTGTTTGCATGGCATTGGAAACTCAAGCATCACAACAGAAGCTTCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGATATTCAGGCTAAGATATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAACAGCCAGTTTCCTCTGGATTTGAACCAGACAAAAGTAGCTGGGGTTGGAATTGGTTAGAAAGATGGATGGCTGTCCGGCCTTGGGAGAACCGCTTTGTTGACATTAATGTGAAGGATGGGGTAACTGTGCATGAAAATGAAGCTAAGGATGGTAAAAGTGGAACCACACCTCAGTTGACTTCCGCTAACAAGAAACCATTCTCATCAAACACTCATCCAAACCCGGCAAATCATGGAACTGGTCCCACTATTTCTGATGAGTGTGATTCATCACCTAGTAAGTCTGCTGGTTTGCTAGAATCATCAAAAACACAATCCGTTAAGCCAACTTCTAAGGGTAATGTTGAAAATACTGCTGAAGAAGTGAACTCAAAACTTAGAATTGGGTCAAGATCTCACAGTAATCCAAAGGAGAGAACATCACAGGTAGATAAGCAGGCGAAAAAACGATTATCTCTGCCTAACAATGGTGAGTGTTCTATTTATGATCATTTTATTGCTTTTTTGTACACTGGGGGTCTGACACCTGCTTCACGAGCAGGGGGTGGTGCAGGATCTCAAATAGTCAAACACCCGATTAGTACTACTAACGTGAAAGGGTCGCTAAGCACACAAAAGTCTAGTAGGGATAAGCCTAAGCTCAATGGAAGAAGGGATGTGAATACAAAATCAGATCCATAG 1365 0.4344 MGVSGKWIRALIGLKKSEKPESSQKDGNKVGKLHHQRRQVVEFDNGKLPNELDCEATPPTGDDNVHANLDANYSSSSSQQATDAAHDQQMKEEWAAIHIQTAFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMALETQASQQKLQQNLANEARVREIEEGWCDSVGSVEDIQAKILKRQEAAAKRERAMAYALSHQWQAGSRQQPVSSGFEPDKSSWGWNWLERWMAVRPWENRFVDINVKDGVTVHENEAKDGKSGTTPQLTSANKKPFSSNTHPNPANHGTGPTISDECDSSPSKSAGLLESSKTQSVKPTSKGNVENTAEEVNSKLRIGSRSHSNPKERTSQVDKQAKKRLSLPNNGECSIYDHFIAFLYTGGLTPASRAGGGAGSQIVKHPISTTNVKGSLSTQKSSRDKPKLNGRRDVNTKSDP 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00843 454 PANTHER IQ-DOMAIN 5-RELATED 1 387 - -
Vimu4g00843 454 MobiDBLite consensus disorder prediction 417 437 - -
Vimu4g00843 454 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
Vimu4g00843 454 Pfam IQ calmodulin-binding motif 116 133 IPR000048 GO:0005515
Vimu4g00843 454 Pfam IQ calmodulin-binding motif 94 113 IPR000048 GO:0005515
Vimu4g00843 454 MobiDBLite consensus disorder prediction 14 87 - -
Vimu4g00843 454 MobiDBLite consensus disorder prediction 273 383 - -
Vimu4g00843 454 MobiDBLite consensus disorder prediction 407 454 - -
Vimu4g00843 454 Gene3D - 89 142 - -
Vimu4g00843 454 MobiDBLite consensus disorder prediction 280 358 - -
Vimu4g00843 454 MobiDBLite consensus disorder prediction 359 374 - -
Vimu4g00843 454 SMART iq_5 114 135 IPR000048 GO:0005515
Vimu4g00843 454 SMART iq_5 91 113 IPR000048 GO:0005515
Vimu4g00843 454 MobiDBLite consensus disorder prediction 438 454 - -
Vimu4g00843 454 MobiDBLite consensus disorder prediction 14 44 - -
Vimu4g00843 454 MobiDBLite consensus disorder prediction 67 85 - -
Vimu4g00843 454 ProSiteProfiles IQ motif profile. 92 120 IPR000048 GO:0005515
Vimu4g00843 454 FunFam IQ-domain 11 91 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00843 Vimu-Chr4 6749594 6754207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00843 1 406 IQD Protein Family AT3G22190 56.204 1.04e-117 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00843 - - gmx:100781346 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00843 4 6749594 6754207 Vimu4g00843 4 6749594 6754207 ECH