Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00832 ATGATGCGAGAGTTGGGGAAGCTCGAAGATGACACACTGGTTGCTATGCAGGGGTATGGTGGACGGTGCAGGGGTGCATCTTCGTTTTGGTTCAGTGCAGGTAGGATACAAGCTTGTGCGTCGGGCTGGAAATTGATTTTGGTCGAGCAAGATGGTGTGATGCGTGATGATTCTGGTGAAGATGGACATACTGGTTCTGATGGTTTCCTTTTTCTGCTGTGTTTCTCTGTGTCCAAAAATATAAAGCAAATTCATGCCCAGTTAATTACTAATGGCCTGAAATCGCCTGCCTTCTTGGCCAAATTAATTGAGCATTATTGTGGCTCACCAGACTCACACATTGCTAATAATGCACATTTAGTGTTCCAGTACCTTGACAAGCCAGACCTGTTTCTCTTTAACACTTTGATAAGATGTGTTAAACCCAATGATTCTATTATAATTTTCCAAGATGAGTTTTCTCGGGGACTCATGTTTTTTGATGATTACACTTACAATTTTGTTCTTGGAGCCTGTGCTCGCTTTCCATCAGCTTCAACGTTGTGGGTAGGTAGACAACTACATTCCCTGATAGTAAAGCATGGGGTTGCGTCAAATATTTTGGTTTCGACTACCAAAATATACTTTTATTCTAGCAACAAAGATATTATCTCAGCCCGACAAGTGTTTGATGAAATGTCAATGAGAAGCAGTATTACGTGGAATGCTATGATAAGAGGTTATTCTTCCCTTAAAGAAGGGAAGACACAATATGCTTTCAATGCATTGTCATTGTTTAAGGACATGTTGGTTGATGTATGTGGAATTAAACCAACAGATACAACCGTAGTTGCTGTTCTTTCAGCAGTTTCTCAGATGGGCTTGCTAGAAACTGGTGCTTGCGTACATGCATTTGCTGAAAAGACATTGTGTACTGAAGATGATGTGTTTATTGGGACTGGTCTTGTTGATATGTACTCAAAATGCGGATGCCTTGATAGTTCCTTGTCTGTCTTCTGGCGCATGAACCAGAAGAATATCTTGACTTGGACGACAATGACTACTGGCCTAGCTATCCATGGGAAAGGAAAACAAGCCTTGGAGGTTTTATACAAGATGGGGGATTACGGTCTGAAGCCTAATGAAGCAACTTTTACTAGCTTTTTATCTGCTTGTTGTCATGGTGGGCTTGTCGAAGAAGGCCTTCAATTGTTCCATGAAATGAAGAGAACATTTAATGTGACACCTCAGATAAAACACTATGGTTGCATTGTTGACCTTCTTGGTCGTGCTGGAAAGTTAAAAGAAGCATATGAATTTATCATGTGGATGCCAATTAATCCTGATGATGTAATATGGAGGACTCTGCTAGGTGCATGCAAGATTCATGAGAATGTTGTGATGGGAGAGAAGGTGGGAAAATTTCTCCTCCAGTTGGAAGAATGTAGTCGTCCAGAGTTGACTTCAAAGAGCGAAGACTATGTATCGCTGTCAAATGTTTATGCTTTAGCAGAAAGGTGGGTCGAAGTTGAATCTGTAAGGAAACAAATGAGAGCTAAGAGAATCTCGAATAACGCTGGTTGTAGCGCTGTTCAAATTGCTTCAAAGGCTGCATTGAAGCCGCTTGTGGAGAGCTCGTTCCGTGGGAAAGGAATCAAAGGGGTTGAGGGCGGTGCAGTTTCGGTCCTCATTGAACTATTTGTTTGTGCCTCGGAAAGAAGAACTTGTGAACTCATTTTAATAGGTTTCGATCAACTTTGTGGACTTGTTGAATCAAGGTGTGGGAGTGGTCATTGTGTCCAAAAAATTATAAGGGTCTCTCCCGTGGCAAGCGATAGAGGGATTAGAATTTTGGTCTCCATTTGTAGATATTCTGTCAATGTCAGGGTTGGGGCTGTGTCAAAGTTCTTTTTGGTGCTTCAAGTGAATAGTGGCTTCAAGACTAAAGAGAGGGCCAAGGAGATTAGTCAAATTGCACTCCTCAATTTGGAAGAATTCTTCATGTATTCTTGCACCTTTGGCCCTGGAACTGGGCCACGTTATGGACATGTAATGGCTTTGGTGGGGACGAGGTATCTAATGGCAATTGGAGGTAATGATGGAAAGAGACCTTTGACGGATGTACGGGCCTTGGACACAGCTGCCAAGCCTTATGAATGGCGCAAGTTAGAGCCAGAAGGAGAGGGACCACCTCCATGCATGTGTGCTTCTGCCTCCATGAATTCTACTTGTTTTGACTGA 2220 0.4248 MMRELGKLEDDTLVAMQGYGGRCRGASSFWFSAGRIQACASGWKLILVEQDGVMRDDSGEDGHTGSDGFLFLLCFSVSKNIKQIHAQLITNGLKSPAFLAKLIEHYCGSPDSHIANNAHLVFQYLDKPDLFLFNTLIRCVKPNDSIIIFQDEFSRGLMFFDDYTYNFVLGACARFPSASTLWVGRQLHSLIVKHGVASNILVSTTKIYFYSSNKDIISARQVFDEMSMRSSITWNAMIRGYSSLKEGKTQYAFNALSLFKDMLVDVCGIKPTDTTVVAVLSAVSQMGLLETGACVHAFAEKTLCTEDDVFIGTGLVDMYSKCGCLDSSLSVFWRMNQKNILTWTTMTTGLAIHGKGKQALEVLYKMGDYGLKPNEATFTSFLSACCHGGLVEEGLQLFHEMKRTFNVTPQIKHYGCIVDLLGRAGKLKEAYEFIMWMPINPDDVIWRTLLGACKIHENVVMGEKVGKFLLQLEECSRPELTSKSEDYVSLSNVYALAERWVEVESVRKQMRAKRISNNAGCSAVQIASKAALKPLVESSFRGKGIKGVEGGAVSVLIELFVCASERRTCELILIGFDQLCGLVESRCGSGHCVQKIIRVSPVASDRGIRILVSICRYSVNVRVGAVSKFFLVLQVNSGFKTKERAKEISQIALLNLEEFFMYSCTFGPGTGPRYGHVMALVGTRYLMAIGGNDGKRPLTDVRALDTAAKPYEWRKLEPEGEGPPPCMCASASMNSTCFD 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00832 739 SUPERFAMILY Kelch motif 666 731 IPR015915 GO:0005515
Vimu4g00832 739 Pfam E motif 483 525 IPR046848 -
Vimu4g00832 739 NCBIfam pentatricopeptide repeat 377 403 IPR002885 -
Vimu4g00832 739 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 79 262 IPR046960 GO:0003723|GO:0009451
Vimu4g00832 739 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 310 539 - -
Vimu4g00832 739 Pfam PPR repeat family 338 387 IPR002885 -
Vimu4g00832 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 404 IPR002885 -
Vimu4g00832 739 Gene3D - 635 737 IPR015915 GO:0005515
Vimu4g00832 739 Gene3D Tetratricopeptide repeat domain 312 540 IPR011990 GO:0005515
Vimu4g00832 739 Gene3D Tetratricopeptide repeat domain 134 310 IPR011990 GO:0005515
Vimu4g00832 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Vimu4g00832 739 Pfam PPR repeat 232 245 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00832 Vimu-Chr4 6657742 6661853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00832 82 529 Glycoside Hydrolase AT3G49170 29.801 5.86e-66 232
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00832 4 6657742 6661853 Vimu5g01658 5 28160210 28179499 PCT