Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00829 ATGTTTTTTGATGATTACACTTACAATTTTGTTCTTGGAGCCTATGCTCGCTCTCCGTCAGCTTCAACGTTGTGGGTAGGTAGACAACTACATTCCCTGATAGTAAAACATGGGGTTGGGTCAAATATGTTGGTTTCGACTACCAAAATATACTTTTATTCTATCAACAAAGATATTATCTCAGCCCGACAAGTGTTTGATGAAATGTCAATTAGAAGCAGTGTTACGTGGAATGCTATGATAACATGTTATTCTTCCCTTAAAGAAGGGAACAGACAATATGCTTTCAATGCATTGTCATTGTTTATGTACATGGTTGATGTATGTGGAATTAACTCAACAGATACAACCATAGTTGCTGTGCTTTCAACAATTTCTCAGATGGGTTTGCTAGAAACTGGTGCTTGCGTACATGCATTTGCTGAAAAGACATTCTGTACTGAAGATGATGTGTTTATTGGGACTGGTCTTGTTGATATGTACTCAAAATGTGGATGCCTTGATAGTGCCTTGTCTGTCTTCTGGCGCATGAACCAGAAGAATATCTTGACTTGGACGGCAATGACTATTGGCCTAGCTATCCATGGGAAAGGAAAACAAGCCTTGGAGGTTTTATACAAGATGGGGGATTACGGTGTGAAGCCTAATGAAGCAACTTTTACTAGCTTTTTATTTGCTTGTTGTCATGGTGGGCTTGTCGAAGAAGGCCTTCAATTGTTCCATGAAATGAAGAGAACATTTAACGTGACACCTCAGATAAAGCATTATGGTTGCATTGTTGACCTTCTTGGTCGTGCTGGAAAGTTAAAAGAAGCATATGAATTTATCATGCAGATGTCAATTAATCCTGATGATGTAATATGGAGGATTCTGCTAGGTGCATGCAAGATTCATGAGGATGTTGTGATGGGAGAGAAGGTGGGAAAATTTCTCCTCCAGTTGGAAGAATGTAGTCGTCCAGAGTTGACTTCAAAGAGCGAAGACTATGTATCTCTGTCAAATGTTTATGCTTTAGCAGAAAGGTGGGTCGAAGTTGAATCTGTAAGGAAACAAATGAGAGCTAAGAGAATCTCGAATAACGCTGGTTGTAGTGCTGTTCAAATTAGATTAACTGTTGAGCGGGACAATAGTACATTTCCTTCCTGTAAGTCTAATCTTTTTGTCCAAGTATTTTCGAAGATGCCCTTGCAAAATGGAAGTGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCCGATTGTGGAGAGCTCTTTCCGTGGGGAAGAAACAGGATCAAAGGGGTTAAGGGCGGTGCAGTTTCGATCCTCATTGAGCTATTTGTTTGTGCCTCGGAAAGAAGAACTTGTGAACTCATTTTAATAGCTTTAGGTCAACTTTGTGGGTGTGCGGAAGGGCGTGCAGACTTGTTGAATCATGGTGCAGGAGTGTTCGTTGTGTCCAAAAAAATTATAAGGGTCTCTCTCGTGGCAAGCGATAGAGGGGTTAGAATTTTGGCCTCCATTTGTAGGTATTCCGCCAATGCTAGAGTGCTCCATGAAATGTTGCAGGTTGGGGCTGTGTCGAAGTTTTTTTTAGTACTTCAAGTGAATTGCGGCTTCAAGACTAAAGAGAGGGCCAAGGAGATTAGTCAAATTGCACTCTTCAGTTTGGAAGAATTCTTCATGTATTCATGTAACTTTGTTATCTTCCTTTCCGAGATCTAA 1704 0.4055 MFFDDYTYNFVLGAYARSPSASTLWVGRQLHSLIVKHGVGSNMLVSTTKIYFYSINKDIISARQVFDEMSIRSSVTWNAMITCYSSLKEGNRQYAFNALSLFMYMVDVCGINSTDTTIVAVLSTISQMGLLETGACVHAFAEKTFCTEDDVFIGTGLVDMYSKCGCLDSALSVFWRMNQKNILTWTAMTIGLAIHGKGKQALEVLYKMGDYGVKPNEATFTSFLFACCHGGLVEEGLQLFHEMKRTFNVTPQIKHYGCIVDLLGRAGKLKEAYEFIMQMSINPDDVIWRILLGACKIHEDVVMGEKVGKFLLQLEECSRPELTSKSEDYVSLSNVYALAERWVEVESVRKQMRAKRISNNAGCSAVQIRLTVERDNSTFPSCKSNLFVQVFSKMPLQNGSDFTTGFKGCIEADCGELFPWGRNRIKGVKGGAVSILIELFVCASERRTCELILIALGQLCGCAEGRADLLNHGAGVFVVSKKIIRVSLVASDRGVRILASICRYSANARVLHEMLQVGAVSKFFLVLQVNCGFKTKERAKEISQIALFSLEEFFMYSCNFVIFLSEI 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00829 567 Pfam PPR repeat 75 87 IPR002885 -
Vimu4g00829 567 Pfam PPR repeat 256 279 IPR002885 -
Vimu4g00829 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Vimu4g00829 567 Pfam E motif 325 367 IPR046848 -
Vimu4g00829 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 246 IPR002885 -
Vimu4g00829 567 Pfam PPR repeat family 180 229 IPR002885 -
Vimu4g00829 567 Gene3D Tetratricopeptide repeat domain 1 153 IPR011990 GO:0005515
Vimu4g00829 567 Gene3D Tetratricopeptide repeat domain 155 395 IPR011990 GO:0005515
Vimu4g00829 567 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 88 IPR046960 GO:0003723|GO:0009451
Vimu4g00829 567 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 152 380 - -
Vimu4g00829 567 NCBIfam pentatricopeptide repeat 219 245 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00829 Vimu-Chr4 6615444 6617377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00829 87 394 Glycoside Hydrolase AT3G49170 24.299 4.96e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00829 - - pvu:PHAVU_005G118500g 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00829 4 6615444 6617377 Vimu4g00829 4 6615444 6617377 ECH
Vimu4g00829 4 6615444 6617377 Vimu5g01662 5 28244443 28246103 PCT