Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00828 ATGGATGAAATTGAAATTCCTGCTCATTTTCTTTGCCCCATTTCCCTCCAACTCATGAGGGACCCTGTAACTGTTTGCACAGGAATCACTTATGACAGAGAGAACATAGAGAAGTGGTTGTTTTCATGCAAGAACAACACGTGCCCCGTTACCAAGCAGTGCTTATTGGATCATGATCTCACCCCAAACCACACTCTACGCAGGTTGATCCAATCTTGGTGCACCCTCAATGCCTCATTTGGAGTTGAACGCATTCCAACTCCAAAGTCACCAATCGACAGAACTCAGATTGTGAAACTCCTCGTAGAAGCAAAGAAGTTCCCCGAGAAGCAACTCAAATGCCTCACAAGACTTCGATCCATTGCCTTTGAGGGTCAAAGGAACAAGGCCTGTTTAGAGTCTGCAGGAGTTGTTGAATTCTTGGCCTCAACCATGAAGTACAAGACAGAAGAAAACTCAACTGTTCTCTGTGAAGCAGCTATCGAAGTCTTATTCCACCTTAGCCCTTCTGAGGCTCAGCTTAAAGCTCTCTTATATAACGAGGGGTTTCAGTTTATCGAGTCATTGTTCCACGTGTTGAGGCTTGGAAACTACCAATCGAGAGCTTATGCAACCATGTTGCTTAGATCTGCATTGGAGGTGGCTGATCCTATCCAATTGATCAGTGTCAAAACAGTGCTGTTTGTGGAAATCATGCGCGTGCTGCGTGATCAGATTTCGCAACAGGCTTCAAAGGCTGCATTGAAGCTGATCGTGGAGCTCTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCGGTCCTGATTGAGCTACTTCTTTGTACATCGGAAAGAAGAACCTGTGAACTCATTTTGATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTTTCTCTGGTGGCAAGCGATAGAGGGGTTAGAATTTTGGCCTCCATTTGTAGGTATTCAGCAAATGCTAGGGTGCTCCATGAAATGTTGCAGGTTGGGGCTGTGTCAAAGTTGTGTTTGGTGCTTCAAGTTAATTGCAGTTTCAAGACCAAAGAGAGAGCAAAGGAGATACTCAGATTGCATTCCTCAGTTTGGAAGAATTCTCCATGTATTCCTGTTCCTTTGTTATCTTCTTTTCCTTGA 1209 0.4524 MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIEKWLFSCKNNTCPVTKQCLLDHDLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQIVKLLVEAKKFPEKQLKCLTRLRSIAFEGQRNKACLESAGVVEFLASTMKYKTEENSTVLCEAAIEVLFHLSPSEAQLKALLYNEGFQFIESLFHVLRLGNYQSRAYATMLLRSALEVADPIQLISVKTVLFVEIMRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLCTSERRTCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSLVASDRGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCSFKTKERAKEILRLHSSVWKNSPCIPVPLLSSFP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00828 402 SUPERFAMILY RING/U-box 3 77 - -
Vimu4g00828 402 CDD RING-Ubox_PUB 7 60 IPR045210 -
Vimu4g00828 402 PANTHER WDSAM1 PROTEIN 3 394 IPR045185 GO:0061630
Vimu4g00828 402 Gene3D - 81 390 IPR011989 -
Vimu4g00828 402 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Vimu4g00828 402 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Vimu4g00828 402 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Vimu4g00828 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Vimu4g00828 402 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Vimu4g00828 402 SUPERFAMILY ARM repeat 105 386 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00828 Vimu-Chr4 6605566 6606774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00828 2 402 U-box Gene Family AT2G35930 56.296 3.26e-164 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00828 - - gmx:100778012 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00828 4 6605566 6606774 Vimu5g01665 5 28288737 28290333 PCT