Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00827 ATGACAGAAATTGAAATTCCTCAGTTTTTTGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACAACCGTTACGGGCATAACCTACGACAGAGAAAGCATAGAATACTGGTTGTCGAAAGCCAAAGATTGCACGTGTCCAATCACAAAGCAACCATTGCCGCGAAACGCAGAGTTCTTAACCCCAAACCACACGCTCCGGAGGCTAATCCAAGCGTGGTGTTCAGCGAATGAAGCAAACGGTGTTGATCAGATTCCGACACCGAAATCCCCTCTTAGCAATGCCGACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCCACGCTTTCAAAACGCAATGGAGAAGTTGCATAACCTTGCAGTAGAGAACGAGAGGAACAGAAGGTGTATGGCTTCAGCGGGTGTTGCAGAAGCTATGGTGCACGTGGTCACAAAGAGTTTCAAGCAGGGAAAAACGACGTCGTGCGTTGAGGAGGCTCTGAGGATTCTTCGTTTGCTTTGGAGCAGCGCCAATGTGGTGGACAGTAACCACATGAAGCGCTTGGTAAGTCTTAACTTTGACTTTCTGAACTCGTTGACGTGGGTTTTGCAGCTTCAAACTAAGAACAACCTCAAGGTAATAAACGAAGCATTACCTTTATTGAAATTGACAATTGAAGCTAAAGATTCAACCCCTTTAGGGAACTTAGGGCTTGAATTCTTCAGAGTGGTTGTGAATGTGATGAAAAATAGAGAACTCTCTCAGCAAGCTATTAAATCTGCACTGCATGTGCTCATAGAAACCTGTCCTTTAGGGAGAAATAGAACGAAGATAGTTGAAGCAGGTGCGGTGCAGGATCTCGTTGAACTTGCGCTTGAAAAACCAGAAAAGAATCTAACAGAACTGATATTCATCCTTTTGGCGCATCTGTGTTCTTGTGCTGATGGGAGAGACCAGTTTCTGCAGCATGCTGCAGGCATTGCTGTGGTTTCCAAAAGGATCCTTAGGGTTTCTCCAACCACCGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAGTTTTCAGCGTCTAATGAAGTCGTGCAAGAGATGCTGAGAGTTGGTGCTGTGTCAAAGCTTTGCATGGTGCTGCAAGCAGCTTGTGCTTCCCATTTGAAAGAAAAGGCAAGAGGTGTACTTAGGCTACACTCCAAAACATGGAACAATTCTCCCTGTATTCAAGTATATTTGTTAACCAGATTCCAAAGGTGA 1242 0.4485 MTEIEIPQFFACPISLQIMKDPVTTVTGITYDRESIEYWLSKAKDCTCPITKQPLPRNAEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNADVEKLVKDLEVPPRFQNAMEKLHNLAVENERNRRCMASAGVAEAMVHVVTKSFKQGKTTSCVEEALRILRLLWSSANVVDSNHMKRLVSLNFDFLNSLTWVLQLQTKNNLKVINEALPLLKLTIEAKDSTPLGNLGLEFFRVVVNVMKNRELSQQAIKSALHVLIETCPLGRNRTKIVEAGAVQDLVELALEKPEKNLTELIFILLAHLCSCADGRDQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLISKFSASNEVVQEMLRVGAVSKLCMVLQAACASHLKEKARGVLRLHSKTWNNSPCIQVYLLTRFQR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00827 413 Gene3D - 112 400 IPR011989 -
Vimu4g00827 413 SUPERFAMILY ARM repeat 211 377 IPR016024 -
Vimu4g00827 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vimu4g00827 413 CDD RING-Ubox_PUB 7 55 IPR045210 -
Vimu4g00827 413 SUPERFAMILY RING/U-box 3 84 - -
Vimu4g00827 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Vimu4g00827 413 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Vimu4g00827 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vimu4g00827 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00827 Vimu-Chr4 6599014 6600255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00827 3 403 U-box Gene Family AT2G35930 42.469 1.86e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00827 - - gmx:100778547 726.087