Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00826 ATGGCGACGTACTTTCATGGAAGCACTTCAGAGATTCAATCTTCTGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCATCTTACGTACCTTATGCTGACGCGCCGCACCACCCAACACTTCTCGTCAATCCCAACGCTACCAACGCGCTCAACCTCGCGAGTCTCACCCACGCGCCGCCGGTGTCGCCTTCCCCCAACCAGCAGCAGCACGTGATTCACGGCATGACAAACATCCTCGGATCCGGAAATTCCGATGAGCACGCTCACACCCGACCTTCGTTGTTCGGGGAAAACATCGCCGCCTTCCACGGCTTCTCCGGCGGGGCATCCTCCGCCGCCCCTCGCGTTCACTATAACCTCTGGGGCTCGGGGGTTGATCAACCTGGAACGCCTTCTAGCAGCTCCGGCGGTGGCGGTTTCCGGCGGCCCAGTCAGCAGGGGTTGTCTCTCAGCCTTTCTTCACAGCAAACGAATTTCAGGTCAGTTTCTGGGGAGCTTGATATTGCCGGACAGGGCCACGTCGCCGGAACTGGGAACTCGCCGACGTCAGCCGCGTCAACAGGAGTTTCCGGCCTGATTCTGGGCACGAAGTATCTGAAGGCGGCGCAGGAGCTTCTGGATGAAGTTGTTAACGTAGGTAAAGGAATCTACAAAGAGGAAAAGTTTTCAGAGAAGGTGAAAGCGAATAGAGAATCTACTAATTCTGGTGCTGGTGGTGGCGGTGGTTCGAGTGGTGGAGGAGAAAACAGTGCAGGAAAACAAGTGGTCGAACTCAGCACCGCTCAAAGGCAAGAACTTCAGATGAAGAAATCCAAGCTTGTCAACATGCTCGATGAGAGGGTCAGTGAAATTGACAGTAATGCTGTCTCTCGTTTTCAGTTCTTTCTCCTGTGCCCTGAAATTATGCGTAGAGAGGAAACTAAACTGGCAGGAAAAGTGGAACAAAGGTACAGGCAATATCACCATCAAATGCAAATTGTGGTATCATCATTTGAGCAAGCTGCAGGTTATGGGGCTGCAAAATCTTACACTGCCCTTGCCCTAAAGACTATCTCAAAGCAATTCCGGTGCCTTAAAGATGCAATCTCTGCGCAAATCAAAGCCACGAGCAAGACATTGGGTGAAGATGATTGCTTGGGAGTGAAAGTAGAAGGGTCAAGGCTTAGGTATGTTGACCACCATCTCAGGCAACAAAGGGCACTGCAGCAGCTAGGAATGATTCAGCCCAATGCATGGAGGCCACAAAGAGGCTTGCCAGAACGAGCCGTTTCCATTCTTCGCGCTTGGCTTTTTGAGCATTTTCTTCACCCCTATCCAAAGGACTCAGATAAAGTCATGCTTGCTAAACAAACTGGACTGGCTAGAAGCCAGGTGTCAAACTGGTTTATCAATGCCCGGGTTAGGCTGTGGAAGCCGATGGTGGAAGAAATGTACATGGAAGAAATGAAAGATCATGAACAAGCTAACGGCTCAGAAAACACCAGATCAAAAGAATTGAGCAAAGAAGCAAATGTTGCAGCAGAATCAGGAGGCATTAAACTAGATAATTTTCAACCAAAGAAAGATAGCTTCAACAACCAAAACACTTCTCCAAATGAAATCTCAGCAAATTCTTCAATGTCTCCTATCGGAGGGTCCCTTCAATCCCACTCTGGTTTCCATCTTGCAGGATCATCTGAGGTGCAAACGAGTCCGAACAAACCAAGAAGTTCGGAAATGCAAAACTCTCCAAGTAGTATCCTCTCAGTGGACATGGAAATGAAGCATAATGGTGAACATGCAAATACCAGAGAAGCCAACACAAAGTTTGGCATTGAAAGGCACGACAAAGATGGATACCCTTTGATGAGTGGGAATGCAAACCATGGTGGGGGTTTTGGAGCGTTCAGCATGGAAGACATTGGAAACAGATTCAACGTGAGTACTGAGCAACTGGCTTCAAGGTTCCATGGAAATGGTGTTTCTCTCACACTGGGCCTTCCCCACAACGAAAACCTTTCTATGTCAGGAACTCCGCATGGATTTCTCTCACAGAATATTCATTTGGGAAGGAGACTTGAGATGGGAACGAGTGGGAATGAGTTTTGTGCCATCAACACTCCTCCTTCGTCTCACTCAGGAACAACTTATGAGAGCATCGACATTCAAAACAGAAAGAGGTTTGTTGCTCAGTTATTACCTGATTTCGTGGCCTAA 2199 0.4861 MATYFHGSTSEIQSSADGLQTLYLMNPSYVPYADAPHHPTLLVNPNATNALNLASLTHAPPVSPSPNQQQHVIHGMTNILGSGNSDEHAHTRPSLFGENIAAFHGFSGGASSAAPRVHYNLWGSGVDQPGTPSSSSGGGGFRRPSQQGLSLSLSSQQTNFRSVSGELDIAGQGHVAGTGNSPTSAASTGVSGLILGTKYLKAAQELLDEVVNVGKGIYKEEKFSEKVKANRESTNSGAGGGGGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVNMLDERVSEIDSNAVSRFQFFLLCPEIMRREETKLAGKVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYMEEMKDHEQANGSENTRSKELSKEANVAAESGGIKLDNFQPKKDSFNNQNTSPNEISANSSMSPIGGSLQSHSGFHLAGSSEVQTSPNKPRSSEMQNSPSSILSVDMEMKHNGEHANTREANTKFGIERHDKDGYPLMSGNANHGGGFGAFSMEDIGNRFNVSTEQLASRFHGNGVSLTLGLPHNENLSMSGTPHGFLSQNIHLGRRLEMGTSGNEFCAINTPPSSHSGTTYESIDIQNRKRFVAQLLPDFVA 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00826 732 MobiDBLite consensus disorder prediction 484 503 - -
Vimu4g00826 732 MobiDBLite consensus disorder prediction 126 157 - -
Vimu4g00826 732 MobiDBLite consensus disorder prediction 484 579 - -
Vimu4g00826 732 CDD homeodomain 413 473 IPR001356 GO:0003677
Vimu4g00826 732 SUPERFAMILY Homeodomain-like 414 481 IPR009057 -
Vimu4g00826 732 MobiDBLite consensus disorder prediction 520 579 - -
Vimu4g00826 732 SMART prehox3 188 365 IPR006563 -
Vimu4g00826 732 MobiDBLite consensus disorder prediction 124 157 - -
Vimu4g00826 732 Pfam Associated with HOX 194 364 IPR006563 -
Vimu4g00826 732 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 497 - -
Vimu4g00826 732 Gene3D - 416 495 - -
Vimu4g00826 732 MobiDBLite consensus disorder prediction 225 254 - -
Vimu4g00826 732 ProSiteProfiles 'Homeobox' domain profile. 410 473 IPR001356 GO:0003677
Vimu4g00826 732 SMART HOX_1 413 477 IPR001356 GO:0003677
Vimu4g00826 732 FunFam BEL1-like homeodomain protein 9 416 478 - -
Vimu4g00826 732 Pfam Homeobox KN domain 430 469 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00826 Vimu-Chr4 6562416 6566132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00826 1 732 Homeobox Transcription Factor Family AT2G35940 44.359 3.59e-138 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu4g00826 POX 1.9e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00826 - - gmx:100779075 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00826 4 6562416 6566132 Vimu4g00826 4 6562416 6566132 ECH
Vimu4g00826 4 6562416 6566132 Vimu5g01668 5 28311292 28314870 PCT