Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00822 ATGGGAGATTTGCCTTACCAGAATGGGGGAGGACACTGGTTTTCTTCAGGTTCTCAGCCATCTCAGCTCGGGATTCAAGAGGAGGACCGAGTCAATTCTTTGATTAACAAAATGACTGTAAACAATTCAGTTATCATTGCAGGTGAAGGTACGATTGGACGGGCTGCATTTACAGGCAGCCATCAGTGGATTCTTTTGAACAGTTTCACAAAAGATGTATATCCACAGGAGTTATACCCTGAAGTGCATCACCAATTTTCAGCTGGAATACAGACAGTTGCAGTTATTCCTGTACTTCCTCACGGGGTTTGTCAGTTTGGTTCTTTCTTACCTAGGACAAAGAATCTTTACCTTGTAAATATATGGATCAGGAGTGAATCCTCTAGATTAACTTCAGAACTCAAATTTTGCTTATTACTAGAGGACCACAGGAATTCTCTAGTTTGCATTCTAGTGATTGTACCATCATTTAAGAAGCTTTTCTGTTTGCTGTTCCAATGTCCCACAACTAATGAATACTTGATGACACAGATAAATGAGAATATGGGATTTGTGAATGATGTGAAGAGCTTGATCTTGCAATTGGGATGTGTTCCTGGTGCCCTTCTATCTGAAGACTATTCAGCAAATCTCTCTATTGAACGATTTACTGGACCTTCCATTACTGGTGTGCCAGTGACTATCAATCCACCTGTCATTACGTCAAATTGCACTCTCTCAGTAGCTAATGCCTCCGATCAGAAAAGTAATTCAGTTCATACCTCAAGGCCTTTTGTTCAAACACCTTGCCATTTAAATGCGGATACAAGTGCATGCCAGGGTTCTGCACTGACACTGGAAACCTGTAAACTGAACCATATACCCAGCAACCATTGCCAACCAAATGTTATTCCAATGAGTGAAACATACTTTTCTGGCCAACAACGGAATGGAGCTATGGAGGATGAAGTGATAATCTCAGATGTTGATTCATGTCAGCAGCAACATTCTGTTTCACATAATGCTAGATCTACATTCGATAACTTGACTGGTTCTGGGTCTTTTGGTCAATCTTGTCAAAGTGATGATCATCTAACATTAATGGAGCAACAAATTATATCAGCCATTGGGAATCGAGATAATGTTAATCCTTGTTTTAATGTGTCAAGTACCTTAAACATGCTTCATCTACAAACAGATGGAGGCCACATACTTGGCCACAGTACGAGTTCTAGCAGTGCTCCCCCACTAGGAGGAATCCCAATACACGGTGGTATGAGTACTCTTTTGAGGTCAAATCTGATTACTAGTCCTGGTTCACAATCTCCCAAAGCATCCACAGCTGATTTATCCAGAGAAGTTGGGATTGCACTTCAAAATTCTGATTCTTCAACTAAAGCAAGAGGTTGTTCTTCGGCTATTTCGAGTAATCAATGCAGCACCTTTCACATGCATGTAGAAGGTTCTAATCACAAGATGCTCCCTGTAGATTTAAAGTGTGTTTCAACTAATCAAAAAATAGACTATGATTTGCATCAGGCCCGTAACCTCCCCACTTTCCACGTTGAGCAACGTGTGCCCATTAGTGGTCAAATCCCTGGTCTTGCCCATGATTGTATTAGCAAAGATGATAGTATTCAATCTATGATGGAAATGAATCCTAAACTCAAACTAGATTGTACCAAACCTCCATCAGGTGATGACCTGTTTGATGTTTTAGGGGTAGATTTGAAAAACAAATTGCTGAATGGAAATTGGAATAAACTCTTTGCAGACGAATTGGATGCAAATACAGAAAATATGGACAAAAAGTTGGAACCTATGAATATGCCGGGCACAACTACAAATCCTGATATATATTCAGTTAAAGAAGCAATATCAGACAGTGGCATGTTTTCTGGGACGGGAACAGACCACCTCTTGGATGCAGTGGTTTCCAAAGCCAAATCTGTTGTAAAACAGGATTCTGATGACATGTCTTGCAGGACAACATTGACAAGGAATAGTACTTCCTCTGTTCCCTCTCCTTCACGCAGACCGGTTATGTCTGGTAATTTCCAAGGGGGATTATTTGATTTCCCTAAGAATGGTGGTAAAACAGGTGCAACAGAAGCTAGTTTTCTTATGTCCAGATGTAACAAGGAAGATGCCGGAAACTGTTCTCAAACTAGTTCTACTTATGGCTCACAACTTAGTTCATGGGTTGAGAACAGTGGGAGTGTTAAACGTGAGAATAGTGTTTCTACTGGATACTCAAAACGGACAGATGAGGCTTGTAAACCCAATCGTAAGAGGCTTAAACCAGGAGAGAATCCCAGACCTCGCCCCAAAGATCGCCAAATGATTCAAGATCGAGTGAAAGAACTAAGAGAAATTGTGCCAAACGGAGCAAAATGTAGCATAGATGCACTTCTGGAACGGACAATTAAGCACATGCTTTTCTTGCAAAGTGTGACAAAGCATGCTGACAAGCTAAAACAAACTGGCGAGTCTAAGATTATTAATAAGGAAGGTGGGTTGCTTTTGAAAGACAACTTTGAGGGAGGAGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGTCCTATTGTAGTTGAGGATCTGAACCCTCCTCGTCAAATGCTAGTGGAGATGCTTTGTGAGAAGAGAGGTTTCTTTTTGGAAATAGCAGACTTAATCAGAGGATTAGGTTTAACCATATTGAAAGGGGTGATGGAAGCTCACAATGACAAAATCTGGGCACGCTTTGCTGTTGAGGCTAACAGGGATGTAACAAGGATGGAAATATTCATGTCACTGGTTGGTCTTTTGGAGCAAACGGTGAAGGGAAAAGCATCTTCATCCAATGCAATTGATAACATGGTGTATCACACTTTCCCACAGGCTGCACAGATACCAGCAACTGGAAGGCCTAGTAGCTTGCAATGA 2913 0.4113 MGDLPYQNGGGHWFSSGSQPSQLGIQEEDRVNSLINKMTVNNSVIIAGEGTIGRAAFTGSHQWILLNSFTKDVYPQELYPEVHHQFSAGIQTVAVIPVLPHGVCQFGSFLPRTKNLYLVNIWIRSESSRLTSELKFCLLLEDHRNSLVCILVIVPSFKKLFCLLFQCPTTNEYLMTQINENMGFVNDVKSLILQLGCVPGALLSEDYSANLSIERFTGPSITGVPVTINPPVITSNCTLSVANASDQKSNSVHTSRPFVQTPCHLNADTSACQGSALTLETCKLNHIPSNHCQPNVIPMSETYFSGQQRNGAMEDEVIISDVDSCQQQHSVSHNARSTFDNLTGSGSFGQSCQSDDHLTLMEQQIISAIGNRDNVNPCFNVSSTLNMLHLQTDGGHILGHSTSSSSAPPLGGIPIHGGMSTLLRSNLITSPGSQSPKASTADLSREVGIALQNSDSSTKARGCSSAISSNQCSTFHMHVEGSNHKMLPVDLKCVSTNQKIDYDLHQARNLPTFHVEQRVPISGQIPGLAHDCISKDDSIQSMMEMNPKLKLDCTKPPSGDDLFDVLGVDLKNKLLNGNWNKLFADELDANTENMDKKLEPMNMPGTTTNPDIYSVKEAISDSGMFSGTGTDHLLDAVVSKAKSVVKQDSDDMSCRTTLTRNSTSSVPSPSRRPVMSGNFQGGLFDFPKNGGKTGATEASFLMSRCNKEDAGNCSQTSSTYGSQLSSWVENSGSVKRENSVSTGYSKRTDEACKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIINKEGGLLLKDNFEGGATWAYEVGSQSMVCPIVVEDLNPPRQMLVEMLCEKRGFFLEIADLIRGLGLTILKGVMEAHNDKIWARFAVEANRDVTRMEIFMSLVGLLEQTVKGKASSSNAIDNMVYHTFPQAAQIPATGRPSSLQ 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00822 970 MobiDBLite consensus disorder prediction 1 21 - -
Vimu4g00822 970 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 759 808 IPR011598 GO:0046983
Vimu4g00822 970 MobiDBLite consensus disorder prediction 749 774 - -
Vimu4g00822 970 CDD bHLH_AtLHW_like 763 832 - -
Vimu4g00822 970 MobiDBLite consensus disorder prediction 711 748 - -
Vimu4g00822 970 MobiDBLite consensus disorder prediction 711 774 - -
Vimu4g00822 970 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 176 964 IPR043561 GO:0003700|GO:0006355
Vimu4g00822 970 MobiDBLite consensus disorder prediction 650 673 - -
Vimu4g00822 970 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 119 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00822 Vimu-Chr4 6494381 6498104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00822 560 964 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 55.012 8.48e-122 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00822 - - gmx:100787748 1183.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00822 4 6494381 6498104 Vimu4g00822 4 6494381 6498104 ECH
Vimu4g00822 4 6494381 6498104 Vimu5g01670 5 28393931 28399294 PCT