Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00815 ATGGCGACAGACTCCACTTTTCCGCGCAAGATAATTGCGCTGTGTAATTCGCATTATTGTTATCATTACTGCGTTGTGAGAGTGGATGGTCATAAGCGGAGAACGATAGCGTCGCACGTGGTTCGGTTGCGGAAGCAATGTAGAAACGGTTTAGGCGCCGTCGCCGGAGTTAGGAGGGTGGATTTTGTTCTGAGCGCAACCGGTTTATCGCAATTGGATCGGGAGCACGATGGAATCATGGAGCAGATCGGTCGCGGAGCGTTTGGCGCCGCGATTCTGGTGAACCACAAAGCGGAGAAGAAGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAGGAGATGGCACTTATTGCTCGAATTCAGCATCCTTACATTGTGGAATTCAAAGAGGCTTGGGGTTGCTATGTTTGCATTGTTACTGGATATTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAGTCAAATGGGGTTTGCTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAATTACTCTTGGCAGTGGAATACTTGCATTCAAATTTTGTTTTACATCGCGACCTAAAGTGTTCCAATATCTTTCTTACCAAGGATCAAGATGTTCGCCTTGGTGAGTTCATCTACCGAGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCGGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGCTAAAATGCATTTTCGTTGTTCAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGTTTGATAAGTAAGATAAACCGTTCCTCTATTGGCCCTCTGCCTCCCTGCTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGGAAAAATCCTGAGCATCGTCCAACAGCATCTGAAGTCTTAAAGCATCCTTATTTATTACCTTATGTTGACCAATATCGTTCATCTTTCTGTACTCCAACAGCCAGTTCTCCTGAAAAACCAATTTCTGCTGTTCATCATCATCGAAAAAATAAGCCAGAAGGTCAAAACAGTAGTAGTTCAAGTACAGAGAAAGATAGTTTGATGTCAATTATGAAAGACACTGCAAATGCAGTGCAGAAGTGTGATAGCAAACGCACTGAACTAGACTTGACCTCGATCGAGGATGATGGCTCTGAACAACTCCTGCCTGATGAAGAAGGAAATGGCTCTATAAAAGTCAACGCCAAAACTATTGATCAAGAGGTGACAAAGCAGTTTAATAATGAACACCATTCTAATTTTGTACCTAAGCAACCAATAGCAATTAAGAATGTGGTGACAACATTAAGAAATAGAAAACTTAGGGAGACAAGTTCTCCGATAAGAGGCAATAGCATAAAGGGTGGTGGTGTGTTGACGCATAAAATAAATGCAGAGACATTGTCGAAATTGCCCAAACCCAATTTTGGTGCTTGTGATTTGAAGCCGAATTTGGAGGTGCAAACTATTGCATCTTCAAAAGCAACTCCTGATCCTGCTAAAAGATTTCAAGGATCACATACATCAAAGCATCAGTTACCAATGATTGAATCCACACCAAAAACTAAACCTAGACATACTGTGATTCCACCACTGGGTCCTTCCAAACAAGTAGAAGGTCGTGAAGTTCCTGCTAAGCCAAGACAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCTTTTCCAGGACATGTTAGGCAGGCTGGGTTTGATGTTCCCAATGCAGCAAACAATAGTGGAAAGTCAAGTGCAAACAAAATGGTTAGGGAGCCTAAGGTAAGCCATAACCAGTTGACCAACAGTCATCTACCACTTGTTTCTAGAGAGATTACTCGAGAGCCTTTAAAGACTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGATAGCAGTAACTCTGTCTCATCTTCTTTTTCTATTCAAGGATTCGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAAACAACGCTTCCTGTTGAAGAGAGTTTAAACCACGCTGAAAATGTGGAATCACGAGGAGATAGCTGTTCACCTGCATCTTATTCGCATTTTGAGATGTCTGAACAATTGTCTGAAGAAACCCCTGTCATTACGCCACATTTTCAGAAGATAATGACTAATGACGAGAAAGTAGGTCCCAGTTTATCTCCAGATCATTCAGTTCAAGATGCTAAGGTAATGTTTGCTTCTGATGATAGTTTTCCCAGAAATCAGAGGATCACATCTGCTGGCTCCAGGTGTGAAAATACATCTGTAGAGTCCTCTGCTGAAATCACAGAAGAAATAGAAGATGTTGAAGATGTTTCTAAGGAGATGTCTTCAACCAAGTCTCCTCAACAGCCTCTCCCCATTTCTGGAGAAAAGTCTGTTTGTGAAGAATTCGGTCCAGCAAGCAAGCCAAATAACAGACTTGATAAAGTTAGCCAGCCAAAACTTCTGTGCTTCTCCAGTGATGACAAATTTATGGTGAGGGGAAGACTGTCATCAGCGGAAGAAACTTCTCCTTTGATTATCTCTACTAAAATTTCAAGCCAGAAAGTTTTGCAAGAGGAGAAAGGAACAGTTTCGGCAGCAGAAAGGCCAGCTGTTGGCCATTTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTATCGTGTGGGGAGTGAGCAGCCAGTGAAGGAATCCGTGGAGATGGGAGTTCAAAATGTAGATGTTGGCAAGTTTATCAACATTGTAAGGGATGATATAGAAATGAGAAACGTGAACACTCCTTTGACCCTAAAATCTTCTAGTTGCTCAGAAGCTATTGGTTTGAAGGCAAATATTTCTGAAAATATGGAAATCAGAAACTTGAATAATCCTCCTAACATAAAATCTTCGAGTTTCACCGACTCGTTGAGCATGAAATCAAGTCTTTCTGACAATCCTGGTCTCAGGGAACAAGATGTGGAAAATCCCGATTCTCTTGTTGCAAAATTTGATTCCCCTGAGTATTCCGGATACCCTCCTACAGCTGAAGAGGAACCACCAGCAAAGGAAGTTTTGGATGTGAAATCTTCCAGGCAGAGAGCTGAGGCCCTTGAAGGACTGTTAGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTAAAGCCTTTTGGAAAAGATAAAGTTTCCCCAAGGGAAACAGCCATTTGGTTAGCCAAGAGTTTAAAAGGATTGATGCTTGACGAAAGTGGAGGACGCAGTTAA 3360 0.4211 MATDSTFPRKIIALCNSHYCYHYCVVRVDGHKRRTIASHVVRLRKQCRNGLGAVAGVRRVDFVLSATGLSQLDREHDGIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWGCYVCIVTGYCEGGDMAALMKKSNGVCFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGEFIYRDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLAKMHFRCSGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLLPYVDQYRSSFCTPTASSPEKPISAVHHHRKNKPEGQNSSSSSTEKDSLMSIMKDTANAVQKCDSKRTELDLTSIEDDGSEQLLPDEEGNGSIKVNAKTIDQEVTKQFNNEHHSNFVPKQPIAIKNVVTTLRNRKLRETSSPIRGNSIKGGGVLTHKINAETLSKLPKPNFGACDLKPNLEVQTIASSKATPDPAKRFQGSHTSKHQLPMIESTPKTKPRHTVIPPLGPSKQVEGREVPAKPRQKTPPSLLKPPSFPGHVRQAGFDVPNAANNSGKSSANKMVREPKVSHNQLTNSHLPLVSREITREPLKTFESSSKGMQTDSSNSVSSSFSIQGFELSDFATTFIDLSETTLPVEESLNHAENVESRGDSCSPASYSHFEMSEQLSEETPVITPHFQKIMTNDEKVGPSLSPDHSVQDAKVMFASDDSFPRNQRITSAGSRCENTSVESSAEITEEIEDVEDVSKEMSSTKSPQQPLPISGEKSVCEEFGPASKPNNRLDKVSQPKLLCFSSDDKFMVRGRLSSAEETSPLIISTKISSQKVLQEEKGTVSAAERPAVGHFPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINIVRDDIEMRNVNTPLTLKSSSCSEAIGLKANISENMEIRNLNNPPNIKSSSFTDSLSMKSSLSDNPGLREQDVENPDSLVAKFDSPEYSGYPPTAEEEPPAKEVLDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMLDESGGRS 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00815 1119 Gene3D Phosphorylase Kinase; domain 1 64 153 - -
Vimu4g00815 1119 MobiDBLite consensus disorder prediction 987 1014 - -
Vimu4g00815 1119 MobiDBLite consensus disorder prediction 775 795 - -
Vimu4g00815 1119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vimu4g00815 1119 FunFam Serine/threonine-protein kinase Nek5 156 414 - -
Vimu4g00815 1119 ProSiteProfiles Protein kinase domain profile. 77 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00815 1119 SMART serkin_6 77 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00815 1119 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 79 1068 - -
Vimu4g00815 1119 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Vimu4g00815 1119 CDD STKc_Nek 79 341 - -
Vimu4g00815 1119 Gene3D Transferase(Phosphotransferase) domain 1 156 415 - -
Vimu4g00815 1119 MobiDBLite consensus disorder prediction 987 1048 - -
Vimu4g00815 1119 MobiDBLite consensus disorder prediction 356 389 - -
Vimu4g00815 1119 MobiDBLite consensus disorder prediction 775 794 - -
Vimu4g00815 1119 Pfam Protein kinase domain 80 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00815 1119 SUPERFAMILY Protein kinase-like (PK-like) 79 387 IPR011009 -
Vimu4g00815 1119 MobiDBLite consensus disorder prediction 413 432 - -
Vimu4g00815 1119 MobiDBLite consensus disorder prediction 552 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00815 Vimu-Chr4 6428273 6435378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00815 83 341 MAP Kinase Kinase Kinase AT1G53570 30.827 2.76e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vimu4g00815 Pkinase 1.4e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00815 K08857 - gmx:100780141 1645.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00815 4 6428273 6435378 Vimu4g00815 4 6428273 6435378 ECH
Vimu4g00815 4 6428273 6435378 Vimu5g01678 5 28493389 28500143 PCT