Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00811 ATGTGTTCGAACAAGAGAAAAAGGTTTATGAGAGCTCTATTCAAGAGAAATGGAGGTTGTGGATGTAGCAACCCTAAATCCTATGAAGTACTCCAACCCACCTCAATTCGAGAAAACACAAACCCTACCACTTCCGGCGACAAAGACAACAACCATGAAAACCCTAACAACGACAACATGCGAAAACCAAATTCAAAACTCATTGACAGTGTGGCGATTGAGAAGGATTCGAAGGACCCGCACAAGGATTTTCGAGACTCCATGCTCCAAATGATCTTCCAGAGACAAATCTTCACCAAAACCGATCTTCAAGACCTTCTCGAGTGCTTCCTCCGCTTGAACGCCGCCTGTCACCACCAAGTTATCGTTCAAGCTTTCATGGAGATTTGTCACGAAACTTTCCCCAAGAAGAATATCAACACCGCAGACGCCAATGCTGCTTCTTTCAATAACAAAATCTGA 462 0.4394 MCSNKRKRFMRALFKRNGGCGCSNPKSYEVLQPTSIRENTNPTTSGDKDNNHENPNNDNMRKPNSKLIDSVAIEKDSKDPHKDFRDSMLQMIFQRQIFTKTDLQDLLECFLRLNAACHHQVIVQAFMEICHETFPKKNINTADANAASFNNKI 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00811 153 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 44 133 IPR038933 GO:0045892
Vimu4g00811 153 MobiDBLite consensus disorder prediction 31 50 - -
Vimu4g00811 153 ProSiteProfiles OVATE domain profile. 73 132 IPR006458 -
Vimu4g00811 153 NCBIfam uncharacterized plant-specific domain TIGR01568 71 131 IPR006458 -
Vimu4g00811 153 MobiDBLite consensus disorder prediction 31 67 - -
Vimu4g00811 153 Pfam Transcriptional repressor, ovate 77 132 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00811 Vimu-Chr4 6406714 6407175 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu4g00811 Ovate 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00811 - - vun:114184742 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00811 4 6406714 6407175 Vimu4g00811 4 6406714 6407175 ECH
Vimu4g00811 4 6406714 6407175 Vimu5g01689 5 28565556 28567075 PCT