Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00808 ATGCTTGTGGTTTTGGGGTATGTTTCTTTTTTGAAATGGCGTGGTTTGAGGAAGAATAAAGGTTTTGGAAGAGTGGGATGTTGTCCCAAAGAGTTTGTTTATAAGGAGGTGAAGTTGGCCATTAAGGAGTTTCATGCCTCAAGAGTAATTGGGAATGAGTCTTTTGGGACAGTGTACAAGGCTTTGTTGGAGTCTTCTAGGACAATAACTACAATCAAAAGTTCAACACAGGATGATGGAAAGACTAAGTTTTTGCCAGAATTATCAATTATAGCTAGTTTGAGGCACAAGAACTTGGTTCAACTCCTAGGTTTGTGTGTTGAGAAAGGTGAATTGTTGCTTGAGATGTTGGCATAG 357 0.3922 MLVVLGYVSFLKWRGLRKNKGFGRVGCCPKEFVYKEVKLAIKEFHASRVIGNESFGTVYKALLESSRTITTIKSSTQDDGKTKFLPELSIIASLRHKNLVQLLGLCVEKGELLLEMLA 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00808 118 PANTHER - 9 114 - -
Vimu4g00808 118 ProSiteProfiles Protein kinase domain profile. 44 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00808 118 Gene3D Phosphorylase Kinase; domain 1 17 115 - -
Vimu4g00808 118 Pfam Protein tyrosine and serine/threonine kinase 46 114 IPR001245 GO:0004672|GO:0006468
Vimu4g00808 118 SUPERFAMILY Protein kinase-like (PK-like) 29 115 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00808 Vimu-Chr4 6351542 6351898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00808 2 114 Receptor kinase-like Gene Family AT5G55830 52.586 2.91e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu4g00808 PK_Tyr_Ser-Thr 4.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00808 - - vum:124824905 185.652