Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00803 ATGTCGATCGCTGCTTCTTCCATGTTTCCTGGCTTCAGATTCTGCCCCACCGATGAGGAGTTGATTTCTTACTACCTTAGGAAGAAGTTGGATGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTCTGTAAATTCGAGCCTTGGGATTTACCAGTGGGACGGTGGCAACTCAATCGAAATTTGTCAACTTTACATACTACTGCAAATATTTATTTTGTGGAGAACATCTTTCTCGTGCAAGGCTCAAGTAGTACTGGTTTGAAACCAGCGAAATCGTTCATTCAATCAGATAACGAATGGTTCTTCTTCTCTCCTCGTGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGGGCAACTGAATGTGGATATTGGAAGGCCACCGGCAAAGAGCGTAATGTAAAGTCAGGTTCCAACGTTATAGGAACAAAGAGGACTTTGGTGTTTCACTTGGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATTATGCACGAGTACTGCATCAATGACAAGTCTCAGGATTCTTTGGTTATTTGTCGGCTGAAGAGGAACACAGAGTTCCGTTTGAGTGATCATTCGAATAGAGCTTCTTCAAGTCAAAGGCATCCCGTGAATTCACACGAAAGTGGTTGTGCCATATCAGAAGGTGGTGGTATAGATCAAAGGGATGTTTGTGAGCAGGACAAAGAGGTGGGATGTAGCTCCAAGAGGAGCAGTAACAGTTACGGTTCTCCTTCCAATGAGCAGATAGATTCTGTGTCGGAATCCAATCATCGACCAGTTAATGAAGCTACACTGACAGAATCTTCAGATCAAGCAAAGGAGGTGTATGAAGAGGATTGTTATGCAGAGATACTGAAGGATGATATCATAAAACTAGACGAATCATCAATCTCAGCAGAGGTTCACACAGGAGCACATGATCCTGCACAAGTGCATCCTTCGCAAGGCACAGCAAAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCGTTCTTCTCCTGCAGTGGTTGGTTTCCGAAGCACAATAATGCAGTCGTCAAAGAGTACCTTCTTCGCCGGAATAAGCAACAGTTTGGTGGCACTTGTTTTCTTGGTTTTCACTCTGATATTTTTGGTGTTTGTAACCTATGATTAA 1152 0.4349 MSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKFEPWDLPVGRWQLNRNLSTLHTTANIYFVENIFLVQGSSSTGLKPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVICRLKRNTEFRLSDHSNRASSSQRHPVNSHESGCAISEGGGIDQRDVCEQDKEVGCSSKRSSNSYGSPSNEQIDSVSESNHRPVNEATLTESSDQAKEVYEEDCYAEILKDDIIKLDESSISAEVHTGAHDPAQVHPSQGTAKRRIRLRVGNSKRSSPAVVGFRSTIMQSSKSTFFAGISNSLVALVFLVFTLIFLVFVTYD 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00803 383 MobiDBLite consensus disorder prediction 238 275 - -
Vimu4g00803 383 ProSiteProfiles NAC domain profile. 8 188 IPR003441 GO:0003677|GO:0006355
Vimu4g00803 383 SUPERFAMILY NAC domain 4 187 IPR036093 GO:0003677|GO:0006355
Vimu4g00803 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 266 - -
Vimu4g00803 383 MobiDBLite consensus disorder prediction 195 211 - -
Vimu4g00803 383 Pfam No apical meristem (NAM) protein 10 171 IPR003441 GO:0003677|GO:0006355
Vimu4g00803 383 Gene3D NAC domain 17 207 IPR036093 GO:0003677|GO:0006355
Vimu4g00803 383 MobiDBLite consensus disorder prediction 194 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00803 Vimu-Chr4 6313164 6315518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00803 1 304 NAC Transcription Factor Family AT2G27300 47.403 1.85e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g00803 NAM 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00803 - - tpra:123896537 488.034